G3ND42_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3ND42_GASAC

Uncharacterized protein. (103 aa)

Predicted Functional Partners:

il1b

0.666

G3Q1B8_GASAC

0.664

G3PP24_GASAC

0.644

G3PTI9_GASAC

0.640

G3N8T7_GASAC

0.627

G3N8T9_GASAC

0.627

G3N8U3_GASAC

0.627

G3PRT3_GASAC

0.623

G3N8U6_GASAC

0.622

G3P0R0_GASAC

0.579

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N8T7_GASAC	G3N8T9_GASAC	ENSGACP00000001724	ENSGACP00000001726	Ig-like domain-containing protein.	Uncharacterized protein.	0.933
G3N8T7_GASAC	G3N8U3_GASAC	ENSGACP00000001724	ENSGACP00000001730	Ig-like domain-containing protein.	Uncharacterized protein.	0.882
G3N8T7_GASAC	G3N8U6_GASAC	ENSGACP00000001724	ENSGACP00000001733	Ig-like domain-containing protein.	Uncharacterized protein.	0.772
G3N8T7_GASAC	G3ND42_GASAC	ENSGACP00000001724	ENSGACP00000003242	Ig-like domain-containing protein.	Uncharacterized protein.	0.627
G3N8T7_GASAC	il1b	ENSGACP00000001724	ENSGACP00000019287	Ig-like domain-containing protein.	Interleukin-1.	0.974
G3N8T9_GASAC	G3N8T7_GASAC	ENSGACP00000001726	ENSGACP00000001724	Uncharacterized protein.	Ig-like domain-containing protein.	0.933
G3N8T9_GASAC	G3N8U3_GASAC	ENSGACP00000001726	ENSGACP00000001730	Uncharacterized protein.	Uncharacterized protein.	0.843
G3N8T9_GASAC	G3N8U6_GASAC	ENSGACP00000001726	ENSGACP00000001733	Uncharacterized protein.	Uncharacterized protein.	0.772
G3N8T9_GASAC	G3ND42_GASAC	ENSGACP00000001726	ENSGACP00000003242	Uncharacterized protein.	Uncharacterized protein.	0.627
G3N8T9_GASAC	il1b	ENSGACP00000001726	ENSGACP00000019287	Uncharacterized protein.	Interleukin-1.	0.969
G3N8U3_GASAC	G3N8T7_GASAC	ENSGACP00000001730	ENSGACP00000001724	Uncharacterized protein.	Ig-like domain-containing protein.	0.882
G3N8U3_GASAC	G3N8T9_GASAC	ENSGACP00000001730	ENSGACP00000001726	Uncharacterized protein.	Uncharacterized protein.	0.843
G3N8U3_GASAC	G3N8U6_GASAC	ENSGACP00000001730	ENSGACP00000001733	Uncharacterized protein.	Uncharacterized protein.	0.775
G3N8U3_GASAC	G3ND42_GASAC	ENSGACP00000001730	ENSGACP00000003242	Uncharacterized protein.	Uncharacterized protein.	0.627
G3N8U3_GASAC	il1b	ENSGACP00000001730	ENSGACP00000019287	Uncharacterized protein.	Interleukin-1.	0.969
G3N8U6_GASAC	G3N8T7_GASAC	ENSGACP00000001733	ENSGACP00000001724	Uncharacterized protein.	Ig-like domain-containing protein.	0.772
G3N8U6_GASAC	G3N8T9_GASAC	ENSGACP00000001733	ENSGACP00000001726	Uncharacterized protein.	Uncharacterized protein.	0.772
G3N8U6_GASAC	G3N8U3_GASAC	ENSGACP00000001733	ENSGACP00000001730	Uncharacterized protein.	Uncharacterized protein.	0.775
G3N8U6_GASAC	G3ND42_GASAC	ENSGACP00000001733	ENSGACP00000003242	Uncharacterized protein.	Uncharacterized protein.	0.622
G3N8U6_GASAC	il1b	ENSGACP00000001733	ENSGACP00000019287	Uncharacterized protein.	Interleukin-1.	0.955