STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL8A1Collagen type VIII alpha 1 chain. (719 aa)    
Predicted Functional Partners:
G3Q0V8_GASAC
WD_REPEATS_REGION domain-containing protein.
    
 0.684
G3Q0W5_GASAC
Uncharacterized protein.
    
 0.684
G3NH46_GASAC
C1q domain-containing protein.
  
 
0.680
G3PX45_GASAC
Protein disulfide-isomerase.
   
  0.658
G3NMX5_GASAC
Integrin beta.
   
 0.629
G3PGE1_GASAC
Collagen, type VI, alpha 1.
  
0.619
G3PAJ6_GASAC
Prolyl 3-hydroxylase 1.
   
 0.611
G3Q9P8_GASAC
ZnMc domain-containing protein.
   
  0.611
G3P149_GASAC
Cartilage oligomeric matrix protein.
   
  0.610
G3NNI4_GASAC
Collagen, type XXVIII, alpha 2a.
  
 
0.605
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.