G3NFE2_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NFE2_GASAC

Rho GTPase activating protein 39. (1080 aa)

Predicted Functional Partners:

G3PJ85_GASAC

0.721

G3PXW9_GASAC

0.713

G3N7W0_GASAC

0.703

G3NBQ0_GASAC

0.662

G3ND39_GASAC

0.662

G3PIZ2_GASAC

0.662

G3PMX9_GASAC

0.662

G3Q329_GASAC

0.662

G3PA20_GASAC

0.657

CDC42

0.657

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	G3N7W0_GASAC	ENSGACP00000016487	ENSGACP00000001394	Cell division cycle 42.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.722
CDC42	G3NBQ0_GASAC	ENSGACP00000016487	ENSGACP00000002747	Cell division cycle 42.	Lamin B2; Belongs to the intermediate filament family.	0.406
CDC42	G3ND39_GASAC	ENSGACP00000016487	ENSGACP00000003239	Cell division cycle 42.	Uncharacterized protein; Belongs to the intermediate filament family.	0.406
CDC42	G3NFE2_GASAC	ENSGACP00000016487	ENSGACP00000004044	Cell division cycle 42.	Rho GTPase activating protein 39.	0.657
CDC42	G3PIZ2_GASAC	ENSGACP00000016487	ENSGACP00000017571	Cell division cycle 42.	Lamin A; Belongs to the intermediate filament family.	0.406
CDC42	G3PMX9_GASAC	ENSGACP00000016487	ENSGACP00000018962	Cell division cycle 42.	Lamin L3; Belongs to the intermediate filament family.	0.406
CDC42	G3PXW9_GASAC	ENSGACP00000016487	ENSGACP00000022458	Cell division cycle 42.	Ras homolog family member F.	0.619
CDC42	G3Q329_GASAC	ENSGACP00000016487	ENSGACP00000024278	Cell division cycle 42.	Lamin B1; Belongs to the intermediate filament family.	0.406
G3N7W0_GASAC	CDC42	ENSGACP00000001394	ENSGACP00000016487	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Cell division cycle 42.	0.722
G3N7W0_GASAC	G3NBQ0_GASAC	ENSGACP00000001394	ENSGACP00000002747	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Lamin B2; Belongs to the intermediate filament family.	0.561
G3N7W0_GASAC	G3ND39_GASAC	ENSGACP00000001394	ENSGACP00000003239	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein; Belongs to the intermediate filament family.	0.561
G3N7W0_GASAC	G3NFE2_GASAC	ENSGACP00000001394	ENSGACP00000004044	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Rho GTPase activating protein 39.	0.703
G3N7W0_GASAC	G3PA20_GASAC	ENSGACP00000001394	ENSGACP00000014444	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.722
G3N7W0_GASAC	G3PIZ2_GASAC	ENSGACP00000001394	ENSGACP00000017571	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Lamin A; Belongs to the intermediate filament family.	0.561
G3N7W0_GASAC	G3PMX9_GASAC	ENSGACP00000001394	ENSGACP00000018962	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Lamin L3; Belongs to the intermediate filament family.	0.561
G3N7W0_GASAC	G3PXW9_GASAC	ENSGACP00000001394	ENSGACP00000022458	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Ras homolog family member F.	0.747
G3N7W0_GASAC	G3Q329_GASAC	ENSGACP00000001394	ENSGACP00000024278	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Lamin B1; Belongs to the intermediate filament family.	0.561
G3NBQ0_GASAC	CDC42	ENSGACP00000002747	ENSGACP00000016487	Lamin B2; Belongs to the intermediate filament family.	Cell division cycle 42.	0.406
G3NBQ0_GASAC	G3N7W0_GASAC	ENSGACP00000002747	ENSGACP00000001394	Lamin B2; Belongs to the intermediate filament family.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.561
G3NBQ0_GASAC	G3ND39_GASAC	ENSGACP00000002747	ENSGACP00000003239	Lamin B2; Belongs to the intermediate filament family.	Uncharacterized protein; Belongs to the intermediate filament family.	0.852