Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NFE6_GASACUncharacterized protein. (628 aa)    
Predicted Functional Partners:
G3P7T1_GASAC
Si:dkey-27c15.3.
 
      0.899
G3PHX5_GASAC
Cramped chromatin regulator homolog 1.
   
 
 0.832
G3PQ00_GASAC
Ss18, like 2.
    
 
 0.780
G3P4E5_GASAC
Uncharacterized protein.
    
 0.703
G3Q4N8_GASAC
MUS81 structure-specific endonuclease subunit.
    
 0.673
G3N4M7_GASAC
Uncharacterized protein.
   
 0.664
G3PHK7_GASAC
DNA polymerase.
   
 0.660
G3PDF4_GASAC
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.655
LSM10
LSM10, U7 small nuclear RNA associated.
    
 0.629
G3P8S9_GASAC
Survival of motor neuron 1, telomeric.
    
 0.616
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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