RNF157 protein (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNF157

Ring finger protein 157. (610 aa)

Predicted Functional Partners:

G3Q4M1_GASAC

0.773

G3NAL0_GASAC

0.710

G3NKF8_GASAC

0.710

G3NTX7_GASAC

0.710

G3PBV2_GASAC

0.710

G3NW49_GASAC

0.672

G3P372_GASAC

0.672

G3Q4H9_GASAC

0.672

G3PMS3_GASAC

0.671

G3P6I1_GASAC

0.636

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NAL0_GASAC	G3Q4M1_GASAC	ENSGACP00000002355	ENSGACP00000024825	Multiple EGF-like-domains 8.	Ankyrin repeat domain 46b.	0.741
G3NAL0_GASAC	RNF157	ENSGACP00000002355	ENSGACP00000004064	Multiple EGF-like-domains 8.	Ring finger protein 157.	0.710
G3NKF8_GASAC	G3Q4M1_GASAC	ENSGACP00000005821	ENSGACP00000024825	Attractin.	Ankyrin repeat domain 46b.	0.741
G3NKF8_GASAC	RNF157	ENSGACP00000005821	ENSGACP00000004064	Attractin.	Ring finger protein 157.	0.710
G3NTX7_GASAC	G3Q4M1_GASAC	ENSGACP00000008795	ENSGACP00000024825	Attractin-like 1b.	Ankyrin repeat domain 46b.	0.741
G3NTX7_GASAC	RNF157	ENSGACP00000008795	ENSGACP00000004064	Attractin-like 1b.	Ring finger protein 157.	0.710
G3NW49_GASAC	G3P372_GASAC	ENSGACP00000009568	ENSGACP00000012045	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.900
G3NW49_GASAC	RNF157	ENSGACP00000009568	ENSGACP00000004064	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Ring finger protein 157.	0.672
G3P372_GASAC	G3NW49_GASAC	ENSGACP00000012045	ENSGACP00000009568	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.900
G3P372_GASAC	RNF157	ENSGACP00000012045	ENSGACP00000004064	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Ring finger protein 157.	0.672
G3P6I1_GASAC	RNF157	ENSGACP00000013204	ENSGACP00000004064	Unc-45 myosin chaperone B.	Ring finger protein 157.	0.636
G3PBV2_GASAC	G3Q4M1_GASAC	ENSGACP00000015076	ENSGACP00000024825	Attractin-like 1a.	Ankyrin repeat domain 46b.	0.741
G3PBV2_GASAC	RNF157	ENSGACP00000015076	ENSGACP00000004064	Attractin-like 1a.	Ring finger protein 157.	0.710
G3PMS3_GASAC	RNF157	ENSGACP00000018906	ENSGACP00000004064	Uncharacterized protein.	Ring finger protein 157.	0.671
G3Q4H9_GASAC	RNF157	ENSGACP00000024783	ENSGACP00000004064	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Ring finger protein 157.	0.672
G3Q4M1_GASAC	G3NAL0_GASAC	ENSGACP00000024825	ENSGACP00000002355	Ankyrin repeat domain 46b.	Multiple EGF-like-domains 8.	0.741
G3Q4M1_GASAC	G3NKF8_GASAC	ENSGACP00000024825	ENSGACP00000005821	Ankyrin repeat domain 46b.	Attractin.	0.741
G3Q4M1_GASAC	G3NTX7_GASAC	ENSGACP00000024825	ENSGACP00000008795	Ankyrin repeat domain 46b.	Attractin-like 1b.	0.741
G3Q4M1_GASAC	G3PBV2_GASAC	ENSGACP00000024825	ENSGACP00000015076	Ankyrin repeat domain 46b.	Attractin-like 1a.	0.741
G3Q4M1_GASAC	RNF157	ENSGACP00000024825	ENSGACP00000004064	Ankyrin repeat domain 46b.	Ring finger protein 157.	0.773