G3NFZ7_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NFZ7_GASAC

Signal peptide, CUB domain, EGF-like 3. (1003 aa)

Predicted Functional Partners:

G3NZ98_GASAC

0.729

G3N415_GASAC

0.728

G3PTN1_GASAC

0.728

G3NIY0_GASAC

0.720

G3NK22_GASAC

0.720

PTK7

0.697

NCSTN

0.653

G3PH53_GASAC

0.638

G3N9I3_GASAC

0.637

G3NNZ1_GASAC

0.633

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N415_GASAC	G3NFZ7_GASAC	ENSGACP00000000032	ENSGACP00000004252	LAG1_DNAbind domain-containing protein.	Signal peptide, CUB domain, EGF-like 3.	0.728
G3N415_GASAC	G3PTN1_GASAC	ENSGACP00000000032	ENSGACP00000020967	LAG1_DNAbind domain-containing protein.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.860
G3N9I3_GASAC	G3NFZ7_GASAC	ENSGACP00000001973	ENSGACP00000004252	Myb-like, SWIRM and MPN domains 1.	Signal peptide, CUB domain, EGF-like 3.	0.637
G3N9I3_GASAC	G3NIY0_GASAC	ENSGACP00000001973	ENSGACP00000005290	Myb-like, SWIRM and MPN domains 1.	AT rich interactive domain 4A (RBP1-like).	0.804
G3N9I3_GASAC	G3NK22_GASAC	ENSGACP00000001973	ENSGACP00000005684	Myb-like, SWIRM and MPN domains 1.	Translocase of outer mitochondrial membrane 20.	0.804
G3NFZ7_GASAC	G3N415_GASAC	ENSGACP00000004252	ENSGACP00000000032	Signal peptide, CUB domain, EGF-like 3.	LAG1_DNAbind domain-containing protein.	0.728
G3NFZ7_GASAC	G3N9I3_GASAC	ENSGACP00000004252	ENSGACP00000001973	Signal peptide, CUB domain, EGF-like 3.	Myb-like, SWIRM and MPN domains 1.	0.637
G3NFZ7_GASAC	G3NIY0_GASAC	ENSGACP00000004252	ENSGACP00000005290	Signal peptide, CUB domain, EGF-like 3.	AT rich interactive domain 4A (RBP1-like).	0.720
G3NFZ7_GASAC	G3NK22_GASAC	ENSGACP00000004252	ENSGACP00000005684	Signal peptide, CUB domain, EGF-like 3.	Translocase of outer mitochondrial membrane 20.	0.720
G3NFZ7_GASAC	G3NNZ1_GASAC	ENSGACP00000004252	ENSGACP00000007055	Signal peptide, CUB domain, EGF-like 3.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.633
G3NFZ7_GASAC	G3NZ98_GASAC	ENSGACP00000004252	ENSGACP00000010670	Signal peptide, CUB domain, EGF-like 3.	Matrix metallopeptidase 9.	0.729
G3NFZ7_GASAC	G3PH53_GASAC	ENSGACP00000004252	ENSGACP00000016928	Signal peptide, CUB domain, EGF-like 3.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.638
G3NFZ7_GASAC	G3PTN1_GASAC	ENSGACP00000004252	ENSGACP00000020967	Signal peptide, CUB domain, EGF-like 3.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.728
G3NFZ7_GASAC	NCSTN	ENSGACP00000004252	ENSGACP00000023450	Signal peptide, CUB domain, EGF-like 3.	Nicastrin.	0.653
G3NFZ7_GASAC	PTK7	ENSGACP00000004252	ENSGACP00000005294	Signal peptide, CUB domain, EGF-like 3.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.697
G3NIY0_GASAC	G3N9I3_GASAC	ENSGACP00000005290	ENSGACP00000001973	AT rich interactive domain 4A (RBP1-like).	Myb-like, SWIRM and MPN domains 1.	0.804
G3NIY0_GASAC	G3NFZ7_GASAC	ENSGACP00000005290	ENSGACP00000004252	AT rich interactive domain 4A (RBP1-like).	Signal peptide, CUB domain, EGF-like 3.	0.720
G3NIY0_GASAC	G3NK22_GASAC	ENSGACP00000005290	ENSGACP00000005684	AT rich interactive domain 4A (RBP1-like).	Translocase of outer mitochondrial membrane 20.	0.790
G3NK22_GASAC	G3N9I3_GASAC	ENSGACP00000005684	ENSGACP00000001973	Translocase of outer mitochondrial membrane 20.	Myb-like, SWIRM and MPN domains 1.	0.804
G3NK22_GASAC	G3NFZ7_GASAC	ENSGACP00000005684	ENSGACP00000004252	Translocase of outer mitochondrial membrane 20.	Signal peptide, CUB domain, EGF-like 3.	0.720