STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NGJ9_GASACDEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. (483 aa)    
Predicted Functional Partners:
G3PVT1_GASAC
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.972
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.970
G3P804_GASAC
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.968
G3Q3U0_GASAC
Decapping mRNA 2.
   
 0.958
G3Q810_GASAC
Decapping mRNA 1B.
   
 0.958
G3NRG8_GASAC
Decapping mRNA 1A.
   
 0.957
G3P5P6_GASAC
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
   
 0.952
G3PP38_GASAC
Uncharacterized protein.
   
 0.952
G3NDN1_GASAC
CCR4-NOT transcription complex, subunit 1.
   
 0.941
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
  
 0.932
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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