G3NGS3_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3NGS3_GASAC

Uncharacterized protein. (87 aa)

Predicted Functional Partners:

G3NGQ8_GASAC

0.938

G3NCX8_GASAC

0.916

G3NRQ2_GASAC

0.878

G3NGN5_GASAC

0.858

G3N4P3_GASAC

0.776

G3P546_GASAC

0.776

G3P570_GASAC

0.776

G3NGM5_GASAC

0.703

G3NG28_GASAC

0.638

G3NCV4_GASAC

0.565

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N4P3_GASAC	G3NCV4_GASAC	ENSGACP00000000263	ENSGACP00000003154	DUF1943 domain-containing protein.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.878
G3N4P3_GASAC	G3NCX8_GASAC	ENSGACP00000000263	ENSGACP00000003178	DUF1943 domain-containing protein.	Apolipoprotein Ea.	0.927
G3N4P3_GASAC	G3NGM5_GASAC	ENSGACP00000000263	ENSGACP00000004481	DUF1943 domain-containing protein.	Uncharacterized protein.	0.972
G3N4P3_GASAC	G3NGN5_GASAC	ENSGACP00000000263	ENSGACP00000004491	DUF1943 domain-containing protein.	Uncharacterized protein.	0.986
G3N4P3_GASAC	G3NGQ8_GASAC	ENSGACP00000000263	ENSGACP00000004514	DUF1943 domain-containing protein.	Apolipoprotein Eb.	0.896
G3N4P3_GASAC	G3NGS3_GASAC	ENSGACP00000000263	ENSGACP00000004529	DUF1943 domain-containing protein.	Uncharacterized protein.	0.776
G3N4P3_GASAC	G3NRQ2_GASAC	ENSGACP00000000263	ENSGACP00000008005	DUF1943 domain-containing protein.	Apolipoprotein A-Ib.	0.947
G3N4P3_GASAC	G3P546_GASAC	ENSGACP00000000263	ENSGACP00000012719	DUF1943 domain-containing protein.	Apolipoprotein Bb, tandem duplicate 2.	0.544
G3N4P3_GASAC	G3P570_GASAC	ENSGACP00000000263	ENSGACP00000012743	DUF1943 domain-containing protein.	Vitellogenin domain-containing protein.	0.551
G3NCV4_GASAC	G3N4P3_GASAC	ENSGACP00000003154	ENSGACP00000000263	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	DUF1943 domain-containing protein.	0.878
G3NCV4_GASAC	G3NCX8_GASAC	ENSGACP00000003154	ENSGACP00000003178	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Apolipoprotein Ea.	0.860
G3NCV4_GASAC	G3NGM5_GASAC	ENSGACP00000003154	ENSGACP00000004481	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Uncharacterized protein.	0.837
G3NCV4_GASAC	G3NGN5_GASAC	ENSGACP00000003154	ENSGACP00000004491	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Uncharacterized protein.	0.921
G3NCV4_GASAC	G3NGQ8_GASAC	ENSGACP00000003154	ENSGACP00000004514	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Apolipoprotein Eb.	0.875
G3NCV4_GASAC	G3NGS3_GASAC	ENSGACP00000003154	ENSGACP00000004529	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Uncharacterized protein.	0.565
G3NCV4_GASAC	G3NRQ2_GASAC	ENSGACP00000003154	ENSGACP00000008005	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Apolipoprotein A-Ib.	0.853
G3NCV4_GASAC	G3P546_GASAC	ENSGACP00000003154	ENSGACP00000012719	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Apolipoprotein Bb, tandem duplicate 2.	0.878
G3NCV4_GASAC	G3P570_GASAC	ENSGACP00000003154	ENSGACP00000012743	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	Vitellogenin domain-containing protein.	0.878
G3NCX8_GASAC	G3N4P3_GASAC	ENSGACP00000003178	ENSGACP00000000263	Apolipoprotein Ea.	DUF1943 domain-containing protein.	0.927
G3NCX8_GASAC	G3NCV4_GASAC	ENSGACP00000003178	ENSGACP00000003154	Apolipoprotein Ea.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.860