G3NGS7_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3NGS7_GASAC

Vacuolar protein sorting 25 homolog. (175 aa)

Predicted Functional Partners:

G3NIR3_GASAC

0.999

G3NNZ5_GASAC

0.999

G3QBH1_GASAC

0.999

G3P9W1_GASAC

0.995

G3PBK8_GASAC

0.995

G3PMY4_GASAC

0.995

G3Q467_GASAC

0.993

G3NNG2_GASAC

0.992

G3NIW2_GASAC

0.986

G3Q4L1_GASAC

0.978

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NGS7_GASAC	G3NIR3_GASAC	ENSGACP00000004533	ENSGACP00000005223	Vacuolar protein sorting 25 homolog.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.999
G3NGS7_GASAC	G3NIW2_GASAC	ENSGACP00000004533	ENSGACP00000005272	Vacuolar protein sorting 25 homolog.	Charged multivesicular body protein 2A.	0.986
G3NGS7_GASAC	G3NNG2_GASAC	ENSGACP00000004533	ENSGACP00000006876	Vacuolar protein sorting 25 homolog.	Zgc:114173.	0.992
G3NGS7_GASAC	G3NNZ5_GASAC	ENSGACP00000004533	ENSGACP00000007059	Vacuolar protein sorting 25 homolog.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.999
G3NGS7_GASAC	G3P9W1_GASAC	ENSGACP00000004533	ENSGACP00000014385	Vacuolar protein sorting 25 homolog.	Charged multivesicular body protein 6a.	0.995
G3NGS7_GASAC	G3PBK8_GASAC	ENSGACP00000004533	ENSGACP00000014982	Vacuolar protein sorting 25 homolog.	Tumor susceptibility 101a.	0.995
G3NGS7_GASAC	G3PMY4_GASAC	ENSGACP00000004533	ENSGACP00000018967	Vacuolar protein sorting 25 homolog.	Charged multivesicular body protein 6.	0.995
G3NGS7_GASAC	G3Q467_GASAC	ENSGACP00000004533	ENSGACP00000024671	Vacuolar protein sorting 25 homolog.	VPS37A subunit of ESCRT-I.	0.993
G3NGS7_GASAC	G3Q4L1_GASAC	ENSGACP00000004533	ENSGACP00000024815	Vacuolar protein sorting 25 homolog.	Uncharacterized protein.	0.978
G3NGS7_GASAC	G3QBH1_GASAC	ENSGACP00000004533	ENSGACP00000027237	Vacuolar protein sorting 25 homolog.	Vacuolar protein sorting 36 homolog.	0.999
G3NIR3_GASAC	G3NGS7_GASAC	ENSGACP00000005223	ENSGACP00000004533	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Vacuolar protein sorting 25 homolog.	0.999
G3NIR3_GASAC	G3NIW2_GASAC	ENSGACP00000005223	ENSGACP00000005272	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Charged multivesicular body protein 2A.	0.985
G3NIR3_GASAC	G3NNG2_GASAC	ENSGACP00000005223	ENSGACP00000006876	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Zgc:114173.	0.969
G3NIR3_GASAC	G3NNZ5_GASAC	ENSGACP00000005223	ENSGACP00000007059	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.997
G3NIR3_GASAC	G3P9W1_GASAC	ENSGACP00000005223	ENSGACP00000014385	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Charged multivesicular body protein 6a.	0.993
G3NIR3_GASAC	G3PBK8_GASAC	ENSGACP00000005223	ENSGACP00000014982	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Tumor susceptibility 101a.	0.994
G3NIR3_GASAC	G3PMY4_GASAC	ENSGACP00000005223	ENSGACP00000018967	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Charged multivesicular body protein 6.	0.993
G3NIR3_GASAC	G3Q467_GASAC	ENSGACP00000005223	ENSGACP00000024671	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	VPS37A subunit of ESCRT-I.	0.991
G3NIR3_GASAC	G3Q4L1_GASAC	ENSGACP00000005223	ENSGACP00000024815	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Uncharacterized protein.	0.911
G3NIR3_GASAC	G3QBH1_GASAC	ENSGACP00000005223	ENSGACP00000027237	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	Vacuolar protein sorting 36 homolog.	0.999