G3NHR1_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3NHR1_GASAC

Uncharacterized protein. (502 aa)

Predicted Functional Partners:

G3NRQ7_GASAC

0.920

G3P322_GASAC

0.894

G3NPM2_GASAC

0.829

G3NZS1_GASAC

0.820

G3Q4A0_GASAC

0.810

G3PXC5_GASAC

0.808

G3NB77_GASAC

0.799

G3ND14_GASAC

0.799

G3P094_GASAC

0.799

G3PVZ0_GASAC

0.799

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NB77_GASAC	G3ND14_GASAC	ENSGACP00000002573	ENSGACP00000003214	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.484
G3NB77_GASAC	G3NHR1_GASAC	ENSGACP00000002573	ENSGACP00000004871	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Uncharacterized protein.	0.799
G3NB77_GASAC	G3NPM2_GASAC	ENSGACP00000002573	ENSGACP00000007286	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	P53-induced death domain protein 1.	0.623
G3NB77_GASAC	G3NRQ7_GASAC	ENSGACP00000002573	ENSGACP00000008024	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	NME/NM23 family member 8; Belongs to the NDK family.	0.814
G3NB77_GASAC	G3NZS1_GASAC	ENSGACP00000002573	ENSGACP00000010844	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	DnaJ (Hsp40) homolog, subfamily C, member 10.	0.672
G3NB77_GASAC	G3P094_GASAC	ENSGACP00000002573	ENSGACP00000011017	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.484
G3NB77_GASAC	G3P322_GASAC	ENSGACP00000002573	ENSGACP00000011995	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	WD repeat domain 90.	0.853
G3NB77_GASAC	G3PVZ0_GASAC	ENSGACP00000002573	ENSGACP00000021779	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.484
G3ND14_GASAC	G3NB77_GASAC	ENSGACP00000003214	ENSGACP00000002573	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	0.484
G3ND14_GASAC	G3NHR1_GASAC	ENSGACP00000003214	ENSGACP00000004871	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Uncharacterized protein.	0.799
G3ND14_GASAC	G3NPM2_GASAC	ENSGACP00000003214	ENSGACP00000007286	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	P53-induced death domain protein 1.	0.623
G3ND14_GASAC	G3NRQ7_GASAC	ENSGACP00000003214	ENSGACP00000008024	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	NME/NM23 family member 8; Belongs to the NDK family.	0.814
G3ND14_GASAC	G3NZS1_GASAC	ENSGACP00000003214	ENSGACP00000010844	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	DnaJ (Hsp40) homolog, subfamily C, member 10.	0.672
G3ND14_GASAC	G3P094_GASAC	ENSGACP00000003214	ENSGACP00000011017	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.484
G3ND14_GASAC	G3P322_GASAC	ENSGACP00000003214	ENSGACP00000011995	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	WD repeat domain 90.	0.853
G3ND14_GASAC	G3PVZ0_GASAC	ENSGACP00000003214	ENSGACP00000021779	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.537
G3NHR1_GASAC	G3NB77_GASAC	ENSGACP00000004871	ENSGACP00000002573	Uncharacterized protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.	0.799
G3NHR1_GASAC	G3ND14_GASAC	ENSGACP00000004871	ENSGACP00000003214	Uncharacterized protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.799
G3NHR1_GASAC	G3NPM2_GASAC	ENSGACP00000004871	ENSGACP00000007286	Uncharacterized protein.	P53-induced death domain protein 1.	0.829
G3NHR1_GASAC	G3NRQ7_GASAC	ENSGACP00000004871	ENSGACP00000008024	Uncharacterized protein.	NME/NM23 family member 8; Belongs to the NDK family.	0.920