Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NHS1_GASACMesenchyme homeobox 1. (257 aa)    
Predicted Functional Partners:
G3PGW3_GASAC
Mesenchyme homeobox 2a.
   
   0.966
G3QAG4_GASAC
Chromatin modifying protein 1B.
    
   0.844
G3PFV0_GASAC
T-box transcription factor 16.
    
 
 0.700
G3PBF7_GASAC
Paired box 9.
    
 
 0.691
G3PLV9_GASAC
UNC homeobox.
   
 0.650
G3QC25_GASAC
MYB binding protein (P160) 1a.
      
 0.613
G3NF05_GASAC
Opsin 3.
      
 0.602
G3NNP8_GASAC
T-box transcription factor Tb.
    
 
 0.599
G3P9H2_GASAC
Tetraspanin.
      
 0.597
TCF15
Transcription factor 15.
    
 
 0.597
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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