G3NI69_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3NI69_GASAC

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (369 aa)

Predicted Functional Partners:

G3PQJ2_GASAC

0.770

G3PIN9_GASAC

0.755

G3N4K0_GASAC

0.740

G3N9L3_GASAC

0.736

G3PAP2_GASAC

0.732

SRSF1

0.732

G3PDD4_GASAC

0.731

G3NEB5_GASAC

0.715

G3NGG6_GASAC

0.715

G3PD82_GASAC

0.707

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N4K0_GASAC	G3NEB5_GASAC	ENSGACP00000000220	ENSGACP00000003666	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	RNA binding motif protein 39b.	0.581
G3N4K0_GASAC	G3NGG6_GASAC	ENSGACP00000000220	ENSGACP00000004422	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Uncharacterized protein.	0.581
G3N4K0_GASAC	G3NI69_GASAC	ENSGACP00000000220	ENSGACP00000005029	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.740
G3N4K0_GASAC	G3PAP2_GASAC	ENSGACP00000000220	ENSGACP00000014666	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Uncharacterized protein.	0.587
G3N4K0_GASAC	G3PD82_GASAC	ENSGACP00000000220	ENSGACP00000015556	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Serine and arginine rich splicing factor 5a.	0.530
G3N4K0_GASAC	G3PDD4_GASAC	ENSGACP00000000220	ENSGACP00000015608	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	CDC5 cell division cycle 5-like (S. pombe).	0.681
G3N4K0_GASAC	G3PIN9_GASAC	ENSGACP00000000220	ENSGACP00000017467	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Small nuclear ribonucleoprotein 27 (U4/U6.U5).	0.465
G3N4K0_GASAC	G3PQJ2_GASAC	ENSGACP00000000220	ENSGACP00000019877	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.	0.411
G3N4K0_GASAC	SRSF1	ENSGACP00000000220	ENSGACP00000027276	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	Serine and arginine rich splicing factor 1.	0.587
G3N9L3_GASAC	G3NEB5_GASAC	ENSGACP00000002003	ENSGACP00000003666	Arginine and glutamate rich 1a.	RNA binding motif protein 39b.	0.602
G3N9L3_GASAC	G3NGG6_GASAC	ENSGACP00000002003	ENSGACP00000004422	Arginine and glutamate rich 1a.	Uncharacterized protein.	0.602
G3N9L3_GASAC	G3NI69_GASAC	ENSGACP00000002003	ENSGACP00000005029	Arginine and glutamate rich 1a.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.736
G3N9L3_GASAC	G3PIN9_GASAC	ENSGACP00000002003	ENSGACP00000017467	Arginine and glutamate rich 1a.	Small nuclear ribonucleoprotein 27 (U4/U6.U5).	0.714
G3NEB5_GASAC	G3N4K0_GASAC	ENSGACP00000003666	ENSGACP00000000220	RNA binding motif protein 39b.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.	0.581
G3NEB5_GASAC	G3N9L3_GASAC	ENSGACP00000003666	ENSGACP00000002003	RNA binding motif protein 39b.	Arginine and glutamate rich 1a.	0.602
G3NEB5_GASAC	G3NI69_GASAC	ENSGACP00000003666	ENSGACP00000005029	RNA binding motif protein 39b.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.715
G3NEB5_GASAC	G3PAP2_GASAC	ENSGACP00000003666	ENSGACP00000014666	RNA binding motif protein 39b.	Uncharacterized protein.	0.500
G3NEB5_GASAC	G3PD82_GASAC	ENSGACP00000003666	ENSGACP00000015556	RNA binding motif protein 39b.	Serine and arginine rich splicing factor 5a.	0.496
G3NEB5_GASAC	G3PDD4_GASAC	ENSGACP00000003666	ENSGACP00000015608	RNA binding motif protein 39b.	CDC5 cell division cycle 5-like (S. pombe).	0.875
G3NEB5_GASAC	SRSF1	ENSGACP00000003666	ENSGACP00000027276	RNA binding motif protein 39b.	Serine and arginine rich splicing factor 1.	0.500