Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
G3NI84_GASACOTU deubiquitinase 1. (221 aa)    
Predicted Functional Partners:
G3QAE1_GASAC
Apoptosis inducing factor mitochondrion associated 1.
    
   0.895
G3PHV2_GASAC
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.865
G3NYV6_GASAC
Interferon regulatory factor 3.
    
 
 0.838
G3QA52_GASAC
Ubiquitin B.
    
 0.833
G3Q227_GASAC
Receptor for activated C kinase 1.
    
 
 0.793
G3PCG6_GASAC
Ribosomal protein S27a.
    
 0.761
G3NZ68_GASAC
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.756
G3NKM9_GASAC
Zinc finger containing ubiquitin peptidase 1.
      
 0.669
G3N9I3_GASAC
Myb-like, SWIRM and MPN domains 1.
   
 
 0.660
G3NMU7_GASAC
OTU domain containing 6B.
      
 0.630
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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