G3NI88_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NI88_GASAC

Transducin beta like 1 X-linked. (513 aa)

Predicted Functional Partners:

G3PFG0_GASAC

0.942

G3QA56_GASAC

0.942

G3NRM5_GASAC

0.936

HDAC3

0.913

G3NRF1_GASAC

0.900

G3P372_GASAC

0.891

G3QCJ8_GASAC

0.886

G3NBJ1_GASAC

0.885

G3NW49_GASAC

0.885

G3PM26_GASAC

0.885

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NBJ1_GASAC	G3NI88_GASAC	ENSGACP00000002688	ENSGACP00000005048	Uncharacterized protein.	Transducin beta like 1 X-linked.	0.885
G3NBJ1_GASAC	G3NW49_GASAC	ENSGACP00000002688	ENSGACP00000009568	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.845
G3NBJ1_GASAC	G3P372_GASAC	ENSGACP00000002688	ENSGACP00000012045	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.845
G3NBJ1_GASAC	HDAC3	ENSGACP00000002688	ENSGACP00000024795	Uncharacterized protein.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.845
G3NI88_GASAC	G3NBJ1_GASAC	ENSGACP00000005048	ENSGACP00000002688	Transducin beta like 1 X-linked.	Uncharacterized protein.	0.885
G3NI88_GASAC	G3NRF1_GASAC	ENSGACP00000005048	ENSGACP00000007918	Transducin beta like 1 X-linked.	Uncharacterized protein.	0.900
G3NI88_GASAC	G3NRM5_GASAC	ENSGACP00000005048	ENSGACP00000007992	Transducin beta like 1 X-linked.	Catenin (cadherin-associated protein), beta 1.	0.936
G3NI88_GASAC	G3NW49_GASAC	ENSGACP00000005048	ENSGACP00000009568	Transducin beta like 1 X-linked.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.885
G3NI88_GASAC	G3P372_GASAC	ENSGACP00000005048	ENSGACP00000012045	Transducin beta like 1 X-linked.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.891
G3NI88_GASAC	G3PFG0_GASAC	ENSGACP00000005048	ENSGACP00000016334	Transducin beta like 1 X-linked.	Nuclear receptor corepressor 2.	0.942
G3NI88_GASAC	G3PM26_GASAC	ENSGACP00000005048	ENSGACP00000018657	Transducin beta like 1 X-linked.	Uncharacterized protein.	0.885
G3NI88_GASAC	G3QA56_GASAC	ENSGACP00000005048	ENSGACP00000026772	Transducin beta like 1 X-linked.	Uncharacterized protein.	0.942
G3NI88_GASAC	G3QCJ8_GASAC	ENSGACP00000005048	ENSGACP00000027613	Transducin beta like 1 X-linked.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.886
G3NI88_GASAC	HDAC3	ENSGACP00000005048	ENSGACP00000024795	Transducin beta like 1 X-linked.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.913
G3NRF1_GASAC	G3NI88_GASAC	ENSGACP00000007918	ENSGACP00000005048	Uncharacterized protein.	Transducin beta like 1 X-linked.	0.900
G3NRF1_GASAC	G3NRM5_GASAC	ENSGACP00000007918	ENSGACP00000007992	Uncharacterized protein.	Catenin (cadherin-associated protein), beta 1.	0.855
G3NRF1_GASAC	G3NW49_GASAC	ENSGACP00000007918	ENSGACP00000009568	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.698
G3NRF1_GASAC	G3P372_GASAC	ENSGACP00000007918	ENSGACP00000012045	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.704
G3NRF1_GASAC	G3QCJ8_GASAC	ENSGACP00000007918	ENSGACP00000027613	Uncharacterized protein.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.922
G3NRF1_GASAC	HDAC3	ENSGACP00000007918	ENSGACP00000024795	Uncharacterized protein.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.699