Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NIC0_GASACISL LIM homeobox 1. (351 aa)    
Predicted Functional Partners:
G3P9T3_GASAC
LIM homeobox 4.
    
 0.893
LHX3
LIM homeobox 3.
    
 0.893
G3NWI6_GASAC
LIM domain binding 1a.
    
 0.877
G3PWI4_GASAC
LIM domain binding 2a.
    
 0.877
G3Q2Z2_GASAC
LIM-domain binding 1b.
    
 0.877
G3Q3B7_GASAC
NK2 homeobox 5.
    
 0.795
G3NUE4_GASAC
Uncharacterized protein.
    
   0.777
G3PGS2_GASAC
T-box transcription factor 20.
   
 0.777
G3NAN3_GASAC
Isopentenyl-diphosphate delta isomerase 1.
    
   0.755
G3Q9B8_GASAC
Achaete-scute family bHLH transcription factor 1a.
    
 0.754
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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