Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
G3NIC7_GASACMago homolog, exon junction complex subunit. (147 aa)    
Predicted Functional Partners:
G3PII4_GASAC
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.999
G3Q963_GASAC
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.998
G3PQE4_GASAC
Btz domain-containing protein.
    
 0.996
G3PLW5_GASAC
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 0.993
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.992
ALYREF
Aly/REF export factor.
   
 0.988
G3P996_GASAC
PYM homolog 1, exon junction complex associated factor.
    
 0.987
G3PFS1_GASAC
Pinin, desmosome associated protein.
   
 0.987
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.981
G3PZK2_GASAC
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.975
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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