SNX11 protein (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SNX11

Sorting nexin 11. (164 aa)

Predicted Functional Partners:

G3PMC7_GASAC

0.917

G3NLK9_GASAC

0.895

G3PUC0_GASAC

0.843

G3P932_GASAC

0.808

G3Q9U2_GASAC

0.808

G3PSM8_GASAC

0.790

G3NIF1_GASAC

0.774

G3NIL9_GASAC

0.749

NFE2L1

0.716

WLS

0.703

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NIF1_GASAC	G3NIL9_GASAC	ENSGACP00000005111	ENSGACP00000005179	CDK5 regulatory subunit associated protein 3.	Tubulin tyrosine ligase-like family, member 6.	0.744
G3NIF1_GASAC	NFE2L1	ENSGACP00000005111	ENSGACP00000005129	CDK5 regulatory subunit associated protein 3.	Nuclear factor, erythroid 2 like 1.	0.712
G3NIF1_GASAC	SNX11	ENSGACP00000005111	ENSGACP00000005151	CDK5 regulatory subunit associated protein 3.	Sorting nexin 11.	0.774
G3NIL9_GASAC	G3NIF1_GASAC	ENSGACP00000005179	ENSGACP00000005111	Tubulin tyrosine ligase-like family, member 6.	CDK5 regulatory subunit associated protein 3.	0.744
G3NIL9_GASAC	NFE2L1	ENSGACP00000005179	ENSGACP00000005129	Tubulin tyrosine ligase-like family, member 6.	Nuclear factor, erythroid 2 like 1.	0.637
G3NIL9_GASAC	SNX11	ENSGACP00000005179	ENSGACP00000005151	Tubulin tyrosine ligase-like family, member 6.	Sorting nexin 11.	0.749
G3NLK9_GASAC	G3P932_GASAC	ENSGACP00000006222	ENSGACP00000014106	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	VPS26, retromer complex component B.	0.990
G3NLK9_GASAC	G3PMC7_GASAC	ENSGACP00000006222	ENSGACP00000018758	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
G3NLK9_GASAC	G3PSM8_GASAC	ENSGACP00000006222	ENSGACP00000020614	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Wnt ligand secretion mediator.	0.787
G3NLK9_GASAC	G3PUC0_GASAC	ENSGACP00000006222	ENSGACP00000021207	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	VPS26, retromer complex component A.	0.999
G3NLK9_GASAC	G3Q9U2_GASAC	ENSGACP00000006222	ENSGACP00000026658	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.990
G3NLK9_GASAC	SNX11	ENSGACP00000006222	ENSGACP00000005151	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Sorting nexin 11.	0.895
G3NLK9_GASAC	WLS	ENSGACP00000006222	ENSGACP00000005388	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Uncharacterized protein.	0.772
G3P932_GASAC	G3NLK9_GASAC	ENSGACP00000014106	ENSGACP00000006222	VPS26, retromer complex component B.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.990
G3P932_GASAC	G3PMC7_GASAC	ENSGACP00000014106	ENSGACP00000018758	VPS26, retromer complex component B.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.995
G3P932_GASAC	G3PSM8_GASAC	ENSGACP00000014106	ENSGACP00000020614	VPS26, retromer complex component B.	Wnt ligand secretion mediator.	0.674
G3P932_GASAC	G3PUC0_GASAC	ENSGACP00000014106	ENSGACP00000021207	VPS26, retromer complex component B.	VPS26, retromer complex component A.	0.993
G3P932_GASAC	G3Q9U2_GASAC	ENSGACP00000014106	ENSGACP00000026658	VPS26, retromer complex component B.	Uncharacterized protein.	0.900
G3P932_GASAC	SNX11	ENSGACP00000014106	ENSGACP00000005151	VPS26, retromer complex component B.	Sorting nexin 11.	0.808
G3P932_GASAC	WLS	ENSGACP00000014106	ENSGACP00000005388	VPS26, retromer complex component B.	Uncharacterized protein.	0.644