Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NJ26_GASACProtocadherin 8. (963 aa)    
Predicted Functional Partners:
ST3GAL1
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
      
 0.645
G3PFV0_GASAC
T-box transcription factor 16.
   
  
 0.608
G3NIR5_GASAC
EGF-like-domain, multiple 6.
    
 0.602
G3P2Q7_GASAC
Ankyrin repeat and sterile alpha motif domain containing 3.
    
 0.586
G3P303_GASAC
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.575
G3P2U5_GASAC
Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.
      
 0.574
G3NML7_GASAC
Glutamate receptor, metabotropic 4.
   
  
 0.563
G3P322_GASAC
WD repeat domain 90.
     
 0.558
G3NXT1_GASAC
T-box transcription factor Ta.
      
 0.532
G3P2T5_GASAC
WD repeat domain 24.
      
 0.528
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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