STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NJ84_GASACFamily with sequence similarity 50 member A. (358 aa)    
Predicted Functional Partners:
G3Q274_GASAC
SLU7 homolog, splicing factor.
   
 
  0.907
G3PAD5_GASAC
Zgc:103692.
    
 0.785
ALYREF
Aly/REF export factor.
   
  0.776
G3PBU2_GASAC
Family with sequence similarity 32 member A.
    
  0.750
G3PZJ2_GASAC
NFKB activating protein.
   
 
  0.747
G3Q2C5_GASAC
RRM domain-containing protein.
   
  0.746
G3NB66_GASAC
UPF3A regulator of nonsense mediated mRNA decay.
   
  0.744
G3PZK2_GASAC
UPF3B regulator of nonsense mediated mRNA decay.
   
  0.744
G3NBJ7_GASAC
CWC22 spliceosome associated protein homolog.
    
  0.736
G3PCH6_GASAC
Cell division cycle 40 homolog (S. cerevisiae).
   
 
  0.722
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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