Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HDGFHeparin binding growth factor. (263 aa)    
Predicted Functional Partners:
G3PBW4_GASAC
HDGF like 2.
   
 
 0.842
PSIP1
PC4 and SFRS1 interacting protein 1.
    
   0.842
EIF2S2
Eukaryotic translation initiation factor 2 subunit beta.
   
   0.753
G3NMM4_GASAC
Cyclin-dependent kinase 13.
    
 
 0.726
G3Q763_GASAC
Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family.
   
 
 0.726
G3PRK4_GASAC
Midkine a.
      
 0.672
ALYREF
Aly/REF export factor.
   
 
 0.613
G3Q2C5_GASAC
RRM domain-containing protein.
   
 
 0.595
G3NW51_GASAC
Polymerase (DNA-directed), delta interacting protein 3.
   
   0.552
G3Q8Z0_GASAC
Pleiotrophin.
      
 0.549
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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