G3NKD6_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NKD6_GASAC

HEAT repeat containing 5B. (1582 aa)

Predicted Functional Partners:

G3PMC9_GASAC

0.781

G3PTA6_GASAC

0.781

G3NRF7_GASAC

0.731

G3PBZ5_GASAC

0.632

G3Q5U9_GASAC

0.623

G3NAQ8_GASAC

0.610

G3NUI0_GASAC

0.610

G3PXG5_GASAC

0.610

G3Q7B0_GASAC

0.610

G3NYN5_GASAC

0.536

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NAQ8_GASAC	G3NKD6_GASAC	ENSGACP00000002403	ENSGACP00000005798	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	HEAT repeat containing 5B.	0.610
G3NAQ8_GASAC	G3NRF7_GASAC	ENSGACP00000002403	ENSGACP00000007924	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	Adaptor related protein complex 4 subunit epsilon 1.	0.981
G3NAQ8_GASAC	G3PBZ5_GASAC	ENSGACP00000002403	ENSGACP00000015119	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.891
G3NAQ8_GASAC	G3PMC9_GASAC	ENSGACP00000002403	ENSGACP00000018760	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	AP-1 complex subunit gamma.	0.963
G3NAQ8_GASAC	G3PTA6_GASAC	ENSGACP00000002403	ENSGACP00000020842	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	AP-1 complex subunit gamma.	0.974
G3NAQ8_GASAC	G3Q5U9_GASAC	ENSGACP00000002403	ENSGACP00000025255	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.835
G3NKD6_GASAC	G3NAQ8_GASAC	ENSGACP00000005798	ENSGACP00000002403	HEAT repeat containing 5B.	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	0.610
G3NKD6_GASAC	G3NRF7_GASAC	ENSGACP00000005798	ENSGACP00000007924	HEAT repeat containing 5B.	Adaptor related protein complex 4 subunit epsilon 1.	0.731
G3NKD6_GASAC	G3NUI0_GASAC	ENSGACP00000005798	ENSGACP00000008998	HEAT repeat containing 5B.	Adaptor related protein complex 1 subunit mu 3; Belongs to the adaptor complexes medium subunit family.	0.610
G3NKD6_GASAC	G3NYN5_GASAC	ENSGACP00000005798	ENSGACP00000010456	HEAT repeat containing 5B.	Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.	0.536
G3NKD6_GASAC	G3PBZ5_GASAC	ENSGACP00000005798	ENSGACP00000015119	HEAT repeat containing 5B.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.632
G3NKD6_GASAC	G3PMC9_GASAC	ENSGACP00000005798	ENSGACP00000018760	HEAT repeat containing 5B.	AP-1 complex subunit gamma.	0.781
G3NKD6_GASAC	G3PTA6_GASAC	ENSGACP00000005798	ENSGACP00000020842	HEAT repeat containing 5B.	AP-1 complex subunit gamma.	0.781
G3NKD6_GASAC	G3PXG5_GASAC	ENSGACP00000005798	ENSGACP00000022304	HEAT repeat containing 5B.	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.610
G3NKD6_GASAC	G3Q5U9_GASAC	ENSGACP00000005798	ENSGACP00000025255	HEAT repeat containing 5B.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.623
G3NKD6_GASAC	G3Q7B0_GASAC	ENSGACP00000005798	ENSGACP00000025770	HEAT repeat containing 5B.	AP-1 complex subunit mu-2; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.610
G3NRF7_GASAC	G3NAQ8_GASAC	ENSGACP00000007924	ENSGACP00000002403	Adaptor related protein complex 4 subunit epsilon 1.	AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]	0.981
G3NRF7_GASAC	G3NKD6_GASAC	ENSGACP00000007924	ENSGACP00000005798	Adaptor related protein complex 4 subunit epsilon 1.	HEAT repeat containing 5B.	0.731
G3NRF7_GASAC	G3NUI0_GASAC	ENSGACP00000007924	ENSGACP00000008998	Adaptor related protein complex 4 subunit epsilon 1.	Adaptor related protein complex 1 subunit mu 3; Belongs to the adaptor complexes medium subunit family.	0.947
G3NRF7_GASAC	G3NYN5_GASAC	ENSGACP00000007924	ENSGACP00000010456	Adaptor related protein complex 4 subunit epsilon 1.	Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.	0.874