G3NKQ5_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NKQ5_GASAC

Upper zone of growth plate and cartilage matrix associated b. (138 aa)

Predicted Functional Partners:

G3NJG7_GASAC

0.568

G3PMG1_GASAC

0.527

G3PYH3_GASAC

0.525

G3PAF2_GASAC

0.524

G3NSQ5_GASAC

0.491

G3NQP3_GASAC

0.470

G3NQU5_GASAC

0.405

G3PGJ4_GASAC

0.405

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NJG7_GASAC	G3NKQ5_GASAC	ENSGACP00000005478	ENSGACP00000005918	DISC1 scaffold protein.	Upper zone of growth plate and cartilage matrix associated b.	0.568
G3NJG7_GASAC	G3NSQ5_GASAC	ENSGACP00000005478	ENSGACP00000008373	DISC1 scaffold protein.	Myristoylated alanine-rich protein kinase C substrate a.	0.601
G3NKQ5_GASAC	G3NJG7_GASAC	ENSGACP00000005918	ENSGACP00000005478	Upper zone of growth plate and cartilage matrix associated b.	DISC1 scaffold protein.	0.568
G3NKQ5_GASAC	G3NQP3_GASAC	ENSGACP00000005918	ENSGACP00000007659	Upper zone of growth plate and cartilage matrix associated b.	Secretion regulating guanine nucleotide exchange factor.	0.470
G3NKQ5_GASAC	G3NQU5_GASAC	ENSGACP00000005918	ENSGACP00000007711	Upper zone of growth plate and cartilage matrix associated b.	Tetraspanin.	0.405
G3NKQ5_GASAC	G3NSQ5_GASAC	ENSGACP00000005918	ENSGACP00000008373	Upper zone of growth plate and cartilage matrix associated b.	Myristoylated alanine-rich protein kinase C substrate a.	0.491
G3NKQ5_GASAC	G3PAF2_GASAC	ENSGACP00000005918	ENSGACP00000014576	Upper zone of growth plate and cartilage matrix associated b.	Usher syndrome 1C.	0.524
G3NKQ5_GASAC	G3PGJ4_GASAC	ENSGACP00000005918	ENSGACP00000016718	Upper zone of growth plate and cartilage matrix associated b.	Tetraspanin.	0.405
G3NKQ5_GASAC	G3PMG1_GASAC	ENSGACP00000005918	ENSGACP00000018792	Upper zone of growth plate and cartilage matrix associated b.	Zinc finger protein 536.	0.527
G3NKQ5_GASAC	G3PYH3_GASAC	ENSGACP00000005918	ENSGACP00000022663	Upper zone of growth plate and cartilage matrix associated b.	Fin bud initiation factor b.	0.525
G3NQP3_GASAC	G3NKQ5_GASAC	ENSGACP00000007659	ENSGACP00000005918	Secretion regulating guanine nucleotide exchange factor.	Upper zone of growth plate and cartilage matrix associated b.	0.470
G3NQP3_GASAC	G3PAF2_GASAC	ENSGACP00000007659	ENSGACP00000014576	Secretion regulating guanine nucleotide exchange factor.	Usher syndrome 1C.	0.571
G3NQP3_GASAC	G3PMG1_GASAC	ENSGACP00000007659	ENSGACP00000018792	Secretion regulating guanine nucleotide exchange factor.	Zinc finger protein 536.	0.555
G3NQP3_GASAC	G3PYH3_GASAC	ENSGACP00000007659	ENSGACP00000022663	Secretion regulating guanine nucleotide exchange factor.	Fin bud initiation factor b.	0.443
G3NQU5_GASAC	G3NKQ5_GASAC	ENSGACP00000007711	ENSGACP00000005918	Tetraspanin.	Upper zone of growth plate and cartilage matrix associated b.	0.405
G3NQU5_GASAC	G3PAF2_GASAC	ENSGACP00000007711	ENSGACP00000014576	Tetraspanin.	Usher syndrome 1C.	0.401
G3NQU5_GASAC	G3PYH3_GASAC	ENSGACP00000007711	ENSGACP00000022663	Tetraspanin.	Fin bud initiation factor b.	0.448
G3NSQ5_GASAC	G3NJG7_GASAC	ENSGACP00000008373	ENSGACP00000005478	Myristoylated alanine-rich protein kinase C substrate a.	DISC1 scaffold protein.	0.601
G3NSQ5_GASAC	G3NKQ5_GASAC	ENSGACP00000008373	ENSGACP00000005918	Myristoylated alanine-rich protein kinase C substrate a.	Upper zone of growth plate and cartilage matrix associated b.	0.491
G3PAF2_GASAC	G3NKQ5_GASAC	ENSGACP00000014576	ENSGACP00000005918	Usher syndrome 1C.	Upper zone of growth plate and cartilage matrix associated b.	0.524