G3NKT4_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3NKT4_GASAC

Nucleotide-binding oligomerization domain containing 1. (948 aa)

Predicted Functional Partners:

G3PU63_GASAC

0.998

G3PHF2_GASAC

0.982

G3N943_GASAC

0.971

G3Q3M2_GASAC

0.863

G3PYF8_GASAC

0.849

G3P6H8_GASAC

0.840

G3PCG6_GASAC

0.837

G3Q117_GASAC

0.837

G3NBB2_GASAC

0.834

G3NSE7_GASAC

0.834

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N943_GASAC	G3NKT4_GASAC	ENSGACP00000001831	ENSGACP00000005947	ATG16 autophagy related 16-like 1 (S. cerevisiae).	Nucleotide-binding oligomerization domain containing 1.	0.971
G3N943_GASAC	G3PU63_GASAC	ENSGACP00000001831	ENSGACP00000021150	ATG16 autophagy related 16-like 1 (S. cerevisiae).	Receptor-interacting serine-threonine kinase 2.	0.722
G3NBB2_GASAC	G3NKT4_GASAC	ENSGACP00000002608	ENSGACP00000005947	Protein kinase domain-containing protein.	Nucleotide-binding oligomerization domain containing 1.	0.834
G3NBB2_GASAC	G3NSE7_GASAC	ENSGACP00000002608	ENSGACP00000008264	Protein kinase domain-containing protein.	Mitogen-activated protein kinase kinase kinase 7.	0.902
G3NBB2_GASAC	G3PCG6_GASAC	ENSGACP00000002608	ENSGACP00000015290	Protein kinase domain-containing protein.	Ribosomal protein S27a.	0.948
G3NBB2_GASAC	G3PU63_GASAC	ENSGACP00000002608	ENSGACP00000021150	Protein kinase domain-containing protein.	Receptor-interacting serine-threonine kinase 2.	0.942
G3NBB2_GASAC	G3PYF8_GASAC	ENSGACP00000002608	ENSGACP00000022648	Protein kinase domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.998
G3NBB2_GASAC	G3Q117_GASAC	ENSGACP00000002608	ENSGACP00000023565	Protein kinase domain-containing protein.	SHANK-associated RH domain interacting protein.	0.580
G3NBB2_GASAC	G3Q3M2_GASAC	ENSGACP00000002608	ENSGACP00000024474	Protein kinase domain-containing protein.	X-linked inhibitor of apoptosis.	0.933
G3NKT4_GASAC	G3N943_GASAC	ENSGACP00000005947	ENSGACP00000001831	Nucleotide-binding oligomerization domain containing 1.	ATG16 autophagy related 16-like 1 (S. cerevisiae).	0.971
G3NKT4_GASAC	G3NBB2_GASAC	ENSGACP00000005947	ENSGACP00000002608	Nucleotide-binding oligomerization domain containing 1.	Protein kinase domain-containing protein.	0.834
G3NKT4_GASAC	G3NSE7_GASAC	ENSGACP00000005947	ENSGACP00000008264	Nucleotide-binding oligomerization domain containing 1.	Mitogen-activated protein kinase kinase kinase 7.	0.834
G3NKT4_GASAC	G3P6H8_GASAC	ENSGACP00000005947	ENSGACP00000013201	Nucleotide-binding oligomerization domain containing 1.	Caspase a; Belongs to the peptidase C14A family.	0.840
G3NKT4_GASAC	G3PCG6_GASAC	ENSGACP00000005947	ENSGACP00000015290	Nucleotide-binding oligomerization domain containing 1.	Ribosomal protein S27a.	0.837
G3NKT4_GASAC	G3PHF2_GASAC	ENSGACP00000005947	ENSGACP00000017027	Nucleotide-binding oligomerization domain containing 1.	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	0.982
G3NKT4_GASAC	G3PU63_GASAC	ENSGACP00000005947	ENSGACP00000021150	Nucleotide-binding oligomerization domain containing 1.	Receptor-interacting serine-threonine kinase 2.	0.998
G3NKT4_GASAC	G3PYF8_GASAC	ENSGACP00000005947	ENSGACP00000022648	Nucleotide-binding oligomerization domain containing 1.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.849
G3NKT4_GASAC	G3Q117_GASAC	ENSGACP00000005947	ENSGACP00000023565	Nucleotide-binding oligomerization domain containing 1.	SHANK-associated RH domain interacting protein.	0.837
G3NKT4_GASAC	G3Q3M2_GASAC	ENSGACP00000005947	ENSGACP00000024474	Nucleotide-binding oligomerization domain containing 1.	X-linked inhibitor of apoptosis.	0.863
G3NSE7_GASAC	G3NBB2_GASAC	ENSGACP00000008264	ENSGACP00000002608	Mitogen-activated protein kinase kinase kinase 7.	Protein kinase domain-containing protein.	0.902