STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NKY0_GASACHistidine ammonia-lyase; Belongs to the PAL/histidase family. (659 aa)    
Predicted Functional Partners:
G3N6Z5_GASAC
Urocanate hydratase 1.
 
 
 0.984
AMDHD1
Amidohydrolase domain containing 1.
 
 
 0.965
G3P780_GASAC
Arginase.
  
 
 0.951
G3N8W9_GASAC
Transcription termination factor, RNA polymerase II.
    
 0.945
G3PBK2_GASAC
Si:dkey-156n14.3.
   
 
 0.938
G3N5M9_GASAC
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
  
 
 0.924
G3PRV3_GASAC
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
  
 
 0.917
G3PAM8_GASAC
Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.
  
 
 0.915
G3PFK8_GASAC
Arginase.
  
 
 0.915
G3P9D3_GASAC
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
  
 
 0.903
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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