Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSDE1Cold shock domain containing E1, RNA-binding. (797 aa)    
Predicted Functional Partners:
G3P7F2_GASAC
RAS p21 protein activator (GTPase activating protein) 1a.
   
 0.897
G3N460_GASAC
Raf-1 proto-oncogene, serine/threonine kinase a.
   
 0.890
G3NHM5_GASAC
A-Raf proto-oncogene, serine/threonine kinase.
   
 0.890
G3Q6E7_GASAC
B-Raf proto-oncogene, serine/threonine kinase.
   
 0.890
G3PFF7_GASAC
Ral guanine nucleotide dissociation stimulator-like 1.
   
 0.888
G3PIC4_GASAC
Ral guanine nucleotide dissociation stimulator-like 2.
   
 0.888
RALGDS
Ral guanine nucleotide dissociation stimulator.
   
 0.888
G3PDD6_GASAC
Son of sevenless homolog 2 (Drosophila).
   
 0.868
G3Q979_GASAC
Son of sevenless homolog 1 (Drosophila).
   
 0.868
G3NMM2_GASAC
Neurofibromin 1b.
    
 0.846
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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