Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NKZ4_GASACHomeobox D4a. (234 aa)    
Predicted Functional Partners:
G3NKY8_GASAC
Homeobox D3a.
   
  
 0.958
HOXA7
Homeobox A7.
   
 
 0.919
G3P493_GASAC
Homeobox C5a.
   
 
 0.907
G3NQ08_GASAC
Homeobox domain-containing protein.
   
 
 0.872
G3P4A4_GASAC
Homeobox C4a.
   
 
 0.869
G3P487_GASAC
Homeobox C6a.
   
 
 0.817
G3NQ13_GASAC
Homeobox B4a.
   
   0.810
G3NIL4_GASAC
Homeobox B5b.
   
   0.754
G3NQ10_GASAC
Homeobox domain-containing protein.
   
   0.754
HOXA4
Homeobox A4.
   
 
 0.724
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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