STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NLF1_GASACCold shock domain containing C2, RNA binding a. (165 aa)    
Predicted Functional Partners:
G3PZX4_GASAC
Small nuclear ribonucleoprotein Sm D3.
   
 0.738
G3Q9D2_GASAC
Small nuclear ribonucleoprotein polypeptide F.
    
  0.724
G3PIM5_GASAC
Small nuclear ribonucleoprotein polypeptide G.
    
  0.718
G3NE42_GASAC
Symplekin.
    
 0.717
G3NSE6_GASAC
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
   
  0.712
G3PA33_GASAC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.709
G3NU46_GASAC
Small nuclear ribonucleoprotein Sm D2.
    
  0.682
G3PM62_GASAC
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.681
NCBP1
Nuclear cap binding protein subunit 1.
    
  0.675
G3NWJ8_GASAC
Polymerase (RNA) II (DNA directed) polypeptide F.
  
 
 0.669
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.