G3NM39_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3NM39_GASAC

Uncharacterized protein. (773 aa)

Predicted Functional Partners:

G3PZN0_GASAC

0.981

G3NAZ4_GASAC

0.980

G3PB27_GASAC

0.980

G3NW49_GASAC

0.944

G3P372_GASAC

0.944

G3PTN1_GASAC

0.943

G3N415_GASAC

0.939

G3Q3M2_GASAC

0.795

G3PGS2_GASAC

0.786

G3Q4H9_GASAC

0.735

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N415_GASAC	G3NAZ4_GASAC	ENSGACP00000000032	ENSGACP00000002490	LAG1_DNAbind domain-containing protein.	HMG box domain-containing protein.	0.490
G3N415_GASAC	G3NM39_GASAC	ENSGACP00000000032	ENSGACP00000006402	LAG1_DNAbind domain-containing protein.	Uncharacterized protein.	0.939
G3N415_GASAC	G3NW49_GASAC	ENSGACP00000000032	ENSGACP00000009568	LAG1_DNAbind domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.974
G3N415_GASAC	G3P372_GASAC	ENSGACP00000000032	ENSGACP00000012045	LAG1_DNAbind domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.974
G3N415_GASAC	G3PB27_GASAC	ENSGACP00000000032	ENSGACP00000014801	LAG1_DNAbind domain-containing protein.	Transcription factor 7 like 1b.	0.490
G3N415_GASAC	G3PTN1_GASAC	ENSGACP00000000032	ENSGACP00000020967	LAG1_DNAbind domain-containing protein.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.907
G3N415_GASAC	G3PZN0_GASAC	ENSGACP00000000032	ENSGACP00000023070	LAG1_DNAbind domain-containing protein.	Lymphoid enhancer-binding factor 1.	0.405
G3N415_GASAC	G3Q4H9_GASAC	ENSGACP00000000032	ENSGACP00000024783	LAG1_DNAbind domain-containing protein.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.758
G3NAZ4_GASAC	G3N415_GASAC	ENSGACP00000002490	ENSGACP00000000032	HMG box domain-containing protein.	LAG1_DNAbind domain-containing protein.	0.490
G3NAZ4_GASAC	G3NM39_GASAC	ENSGACP00000002490	ENSGACP00000006402	HMG box domain-containing protein.	Uncharacterized protein.	0.980
G3NAZ4_GASAC	G3NW49_GASAC	ENSGACP00000002490	ENSGACP00000009568	HMG box domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.691
G3NAZ4_GASAC	G3P372_GASAC	ENSGACP00000002490	ENSGACP00000012045	HMG box domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.691
G3NAZ4_GASAC	G3PB27_GASAC	ENSGACP00000002490	ENSGACP00000014801	HMG box domain-containing protein.	Transcription factor 7 like 1b.	0.902
G3NAZ4_GASAC	G3PTN1_GASAC	ENSGACP00000002490	ENSGACP00000020967	HMG box domain-containing protein.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.457
G3NAZ4_GASAC	G3PZN0_GASAC	ENSGACP00000002490	ENSGACP00000023070	HMG box domain-containing protein.	Lymphoid enhancer-binding factor 1.	0.989
G3NAZ4_GASAC	G3Q4H9_GASAC	ENSGACP00000002490	ENSGACP00000024783	HMG box domain-containing protein.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.691
G3NM39_GASAC	G3N415_GASAC	ENSGACP00000006402	ENSGACP00000000032	Uncharacterized protein.	LAG1_DNAbind domain-containing protein.	0.939
G3NM39_GASAC	G3NAZ4_GASAC	ENSGACP00000006402	ENSGACP00000002490	Uncharacterized protein.	HMG box domain-containing protein.	0.980
G3NM39_GASAC	G3NW49_GASAC	ENSGACP00000006402	ENSGACP00000009568	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.944
G3NM39_GASAC	G3P372_GASAC	ENSGACP00000006402	ENSGACP00000012045	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.944