Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NM40_GASACPre-mRNA processing factor 4Bb. (1023 aa)    
Predicted Functional Partners:
G3PFS1_GASAC
Pinin, desmosome associated protein.
   
 0.995
G3NDK9_GASAC
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 
 0.981
G3PLP1_GASAC
Zinc finger CCCH-type containing 18.
   
   0.954
G3PFL6_GASAC
RNA binding motif protein 25a.
   
  0.953
G3PJW5_GASAC
RNA binding motif protein 25b.
   
  0.953
G3P253_GASAC
Splicing factor 3b, subunit 1.
   
 
 0.952
G3P105_GASAC
Pre-mRNA processing factor 8.
    
 
 0.949
G3PC51_GASAC
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 
 0.941
TCERG1
Transcription elongation regulator 1.
   
 0.930
G3PS33_GASAC
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
 
 0.924
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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