G3NMA7_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G3NMA7_GASAC

Uncharacterized protein. (454 aa)

Predicted Functional Partners:

G3Q7H8_GASAC

0.795

G3PX50_GASAC

0.743

G3Q9R0_GASAC

0.737

G3PLK1_GASAC

0.661

NR0B1

0.632

G3NRM9_GASAC

0.630

G3PFG0_GASAC

0.615

G3QA56_GASAC

0.615

G3P4K7_GASAC

0.594

G3NW47_GASAC

0.579

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NMA7_GASAC	G3NRM9_GASAC	ENSGACP00000006470	ENSGACP00000007996	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.630
G3NMA7_GASAC	G3NW47_GASAC	ENSGACP00000006470	ENSGACP00000009566	Uncharacterized protein.	SLIT and NTRK-like family, member 3a.	0.579
G3NMA7_GASAC	G3P4K7_GASAC	ENSGACP00000006470	ENSGACP00000012530	Uncharacterized protein.	Grainyhead-like transcription factor 3.	0.594
G3NMA7_GASAC	G3PFG0_GASAC	ENSGACP00000006470	ENSGACP00000016334	Uncharacterized protein.	Nuclear receptor corepressor 2.	0.615
G3NMA7_GASAC	G3PLK1_GASAC	ENSGACP00000006470	ENSGACP00000018482	Uncharacterized protein.	G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.661
G3NMA7_GASAC	G3PX50_GASAC	ENSGACP00000006470	ENSGACP00000022189	Uncharacterized protein.	Uncharacterized protein.	0.743
G3NMA7_GASAC	G3Q7H8_GASAC	ENSGACP00000006470	ENSGACP00000025838	Uncharacterized protein.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.795
G3NMA7_GASAC	G3Q9R0_GASAC	ENSGACP00000006470	ENSGACP00000026625	Uncharacterized protein.	Nuclear receptor interacting protein 1b.	0.737
G3NMA7_GASAC	G3QA56_GASAC	ENSGACP00000006470	ENSGACP00000026772	Uncharacterized protein.	Uncharacterized protein.	0.615
G3NMA7_GASAC	NR0B1	ENSGACP00000006470	ENSGACP00000003690	Uncharacterized protein.	Nuclear receptor subfamily 0 group B member 1.	0.632
G3NRM9_GASAC	G3NMA7_GASAC	ENSGACP00000007996	ENSGACP00000006470	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.630
G3NRM9_GASAC	G3PFG0_GASAC	ENSGACP00000007996	ENSGACP00000016334	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Nuclear receptor corepressor 2.	0.710
G3NRM9_GASAC	G3PX50_GASAC	ENSGACP00000007996	ENSGACP00000022189	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.463
G3NRM9_GASAC	G3Q7H8_GASAC	ENSGACP00000007996	ENSGACP00000025838	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.665
G3NRM9_GASAC	G3QA56_GASAC	ENSGACP00000007996	ENSGACP00000026772	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.710
G3NRM9_GASAC	NR0B1	ENSGACP00000007996	ENSGACP00000003690	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Nuclear receptor subfamily 0 group B member 1.	0.785
G3NW47_GASAC	G3NMA7_GASAC	ENSGACP00000009566	ENSGACP00000006470	SLIT and NTRK-like family, member 3a.	Uncharacterized protein.	0.579
G3P4K7_GASAC	G3NMA7_GASAC	ENSGACP00000012530	ENSGACP00000006470	Grainyhead-like transcription factor 3.	Uncharacterized protein.	0.594
G3PFG0_GASAC	G3NMA7_GASAC	ENSGACP00000016334	ENSGACP00000006470	Nuclear receptor corepressor 2.	Uncharacterized protein.	0.615
G3PFG0_GASAC	G3NRM9_GASAC	ENSGACP00000016334	ENSGACP00000007996	Nuclear receptor corepressor 2.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.710