SHKBP1 protein (Gasterosteus aculeatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SHKBP1

SH3KBP1 binding protein 1. (694 aa)

Predicted Functional Partners:

G3NTU2_GASAC

0.834

G3NBF2_GASAC

0.826

G3NPT1_GASAC

0.821

G3P8P2_GASAC

0.806

G3NY10_GASAC

0.781

CUL3

0.781

G3NDH4_GASAC

0.766

MRI1

0.763

G3NM92_GASAC

0.645

G3NGI1_GASAC

0.643

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	G3NY10_GASAC	ENSGACP00000018561	ENSGACP00000010230	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.900
CUL3	SHKBP1	ENSGACP00000018561	ENSGACP00000006484	Cullin 3; Belongs to the cullin family.	SH3KBP1 binding protein 1.	0.781
G3NBF2_GASAC	MRI1	ENSGACP00000002649	ENSGACP00000025111	Leucine rich repeat containing 40.	Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily.	0.928
G3NBF2_GASAC	SHKBP1	ENSGACP00000002649	ENSGACP00000006484	Leucine rich repeat containing 40.	SH3KBP1 binding protein 1.	0.826
G3NDH4_GASAC	SHKBP1	ENSGACP00000003374	ENSGACP00000006484	NudC domain containing 1.	SH3KBP1 binding protein 1.	0.766
G3NGI1_GASAC	SHKBP1	ENSGACP00000004437	ENSGACP00000006484	Sorting nexin 27a.	SH3KBP1 binding protein 1.	0.643
G3NM92_GASAC	SHKBP1	ENSGACP00000006455	ENSGACP00000006484	X-ray repair complementing defective repair in Chinese hamster cells 6.	SH3KBP1 binding protein 1.	0.645
G3NPT1_GASAC	G3NTU2_GASAC	ENSGACP00000007346	ENSGACP00000008760	Coactivator-associated arginine methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	PIH1 domain containing 1.	0.862
G3NPT1_GASAC	SHKBP1	ENSGACP00000007346	ENSGACP00000006484	Coactivator-associated arginine methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	SH3KBP1 binding protein 1.	0.821
G3NTU2_GASAC	G3NPT1_GASAC	ENSGACP00000008760	ENSGACP00000007346	PIH1 domain containing 1.	Coactivator-associated arginine methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.862
G3NTU2_GASAC	SHKBP1	ENSGACP00000008760	ENSGACP00000006484	PIH1 domain containing 1.	SH3KBP1 binding protein 1.	0.834
G3NY10_GASAC	CUL3	ENSGACP00000010230	ENSGACP00000018561	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 3; Belongs to the cullin family.	0.900
G3NY10_GASAC	SHKBP1	ENSGACP00000010230	ENSGACP00000006484	CULLIN_2 domain-containing protein; Belongs to the cullin family.	SH3KBP1 binding protein 1.	0.781
G3P8P2_GASAC	SHKBP1	ENSGACP00000013966	ENSGACP00000006484	Tumor necrosis factor, alpha-induced protein 3.	SH3KBP1 binding protein 1.	0.806
MRI1	G3NBF2_GASAC	ENSGACP00000025111	ENSGACP00000002649	Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily.	Leucine rich repeat containing 40.	0.928
MRI1	SHKBP1	ENSGACP00000025111	ENSGACP00000006484	Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily.	SH3KBP1 binding protein 1.	0.763
SHKBP1	CUL3	ENSGACP00000006484	ENSGACP00000018561	SH3KBP1 binding protein 1.	Cullin 3; Belongs to the cullin family.	0.781
SHKBP1	G3NBF2_GASAC	ENSGACP00000006484	ENSGACP00000002649	SH3KBP1 binding protein 1.	Leucine rich repeat containing 40.	0.826
SHKBP1	G3NDH4_GASAC	ENSGACP00000006484	ENSGACP00000003374	SH3KBP1 binding protein 1.	NudC domain containing 1.	0.766
SHKBP1	G3NGI1_GASAC	ENSGACP00000006484	ENSGACP00000004437	SH3KBP1 binding protein 1.	Sorting nexin 27a.	0.643