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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NME3_GASACDistal-less homeobox 2b. (274 aa)    
Predicted Functional Partners:
G3NMF3_GASAC
Distal-less homeobox 1a.
   
 
0.871
G3PZN0_GASAC
Lymphoid enhancer-binding factor 1.
    
 0.603
G3NTN7_GASAC
Iroquois homeobox 2a.
   
 
 0.548
G3NYF5_GASAC
Homeobox domain-containing protein.
   
 
 0.516
G3PWN4_GASAC
Iroquois homeobox 5a.
   
 
 0.516
G3P7X5_GASAC
Bone morphogenetic protein 4.
     
 0.515
G3NTM4_GASAC
Iroquois homeobox 1a.
    
 
 0.514
G3P2R8_GASAC
Iroquois homeobox 1b.
    
 
 0.514
G3PC30_GASAC
Recombination activating gene 2.
      
 0.479
G3PC31_GASAC
V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...]
      
 0.471
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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