Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NMH4_GASACNudix (nucleoside diphosphate linked moiety X)-type motif 3b. (178 aa)    
Predicted Functional Partners:
G3N5T4_GASAC
RAB interacting factor.
    
   0.855
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.748
G3PVT1_GASAC
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.735
G3NFL1_GASAC
Enhancer of mRNA decapping 4.
    
 0.710
G3PMT1_GASAC
5'-3' exoribonuclease 1.
   
 0.710
G3NRG8_GASAC
Decapping mRNA 1A.
    
 0.699
G3Q810_GASAC
Decapping mRNA 1B.
    
 0.699
G3PM45_GASAC
Nudix (nucleoside diphosphate linked moiety X)-type motif 15; Belongs to the Nudix hydrolase family.
  
 
 0.688
G3PXW8_GASAC
Nudix (nucleoside diphosphate linked moiety X)-type motif 22.
      
 0.668
G3NI70_GASAC
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.661
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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