G3NMU0_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NMU0_GASAC

Tousled-like kinase 1a. (717 aa)

Predicted Functional Partners:

G3Q4V8_GASAC

0.773

G3P8A4_GASAC

0.745

G3PFW6_GASAC

0.552

YTHDC2

0.429

G3Q3U9_GASAC

0.429

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NMU0_GASAC	G3P8A4_GASAC	ENSGACP00000006653	ENSGACP00000013828	Tousled-like kinase 1a.	Anti-silencing function 1Ba histone chaperone.	0.745
G3NMU0_GASAC	G3PFW6_GASAC	ENSGACP00000006653	ENSGACP00000016490	Tousled-like kinase 1a.	Calcineurin binding protein 1.	0.552
G3NMU0_GASAC	G3Q3U9_GASAC	ENSGACP00000006653	ENSGACP00000024552	Tousled-like kinase 1a.	YTH domain-containing protein.	0.429
G3NMU0_GASAC	G3Q4V8_GASAC	ENSGACP00000006653	ENSGACP00000024912	Tousled-like kinase 1a.	Anti-silencing function 1Ba histone chaperone.	0.773
G3NMU0_GASAC	YTHDC2	ENSGACP00000006653	ENSGACP00000024550	Tousled-like kinase 1a.	YTH domain containing 2.	0.429
G3P8A4_GASAC	G3NMU0_GASAC	ENSGACP00000013828	ENSGACP00000006653	Anti-silencing function 1Ba histone chaperone.	Tousled-like kinase 1a.	0.745
G3P8A4_GASAC	G3PFW6_GASAC	ENSGACP00000013828	ENSGACP00000016490	Anti-silencing function 1Ba histone chaperone.	Calcineurin binding protein 1.	0.921
G3PFW6_GASAC	G3NMU0_GASAC	ENSGACP00000016490	ENSGACP00000006653	Calcineurin binding protein 1.	Tousled-like kinase 1a.	0.552
G3PFW6_GASAC	G3P8A4_GASAC	ENSGACP00000016490	ENSGACP00000013828	Calcineurin binding protein 1.	Anti-silencing function 1Ba histone chaperone.	0.921
G3PFW6_GASAC	G3Q4V8_GASAC	ENSGACP00000016490	ENSGACP00000024912	Calcineurin binding protein 1.	Anti-silencing function 1Ba histone chaperone.	0.921
G3Q3U9_GASAC	G3NMU0_GASAC	ENSGACP00000024552	ENSGACP00000006653	YTH domain-containing protein.	Tousled-like kinase 1a.	0.429
G3Q3U9_GASAC	YTHDC2	ENSGACP00000024552	ENSGACP00000024550	YTH domain-containing protein.	YTH domain containing 2.	0.967
G3Q4V8_GASAC	G3NMU0_GASAC	ENSGACP00000024912	ENSGACP00000006653	Anti-silencing function 1Ba histone chaperone.	Tousled-like kinase 1a.	0.773
G3Q4V8_GASAC	G3PFW6_GASAC	ENSGACP00000024912	ENSGACP00000016490	Anti-silencing function 1Ba histone chaperone.	Calcineurin binding protein 1.	0.921
YTHDC2	G3NMU0_GASAC	ENSGACP00000024550	ENSGACP00000006653	YTH domain containing 2.	Tousled-like kinase 1a.	0.429
YTHDC2	G3Q3U9_GASAC	ENSGACP00000024550	ENSGACP00000024552	YTH domain containing 2.	YTH domain-containing protein.	0.967