G3NN23_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NN23_GASAC

Unk zinc finger. (808 aa)

Predicted Functional Partners:

G3NZ68_GASAC

0.600

G3NWL2_GASAC

0.591

UBA3

0.544

G3P4I1_GASAC

0.544

MYORG

0.494

G3NY48_GASAC

0.470

G3P2M0_GASAC

0.466

UBL4A

0.466

G3PH76_GASAC

0.466

G3QA52_GASAC

0.466

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NN23_GASAC	G3NWL2_GASAC	ENSGACP00000006736	ENSGACP00000009731	Unk zinc finger.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	0.591
G3NN23_GASAC	G3NY48_GASAC	ENSGACP00000006736	ENSGACP00000010268	Unk zinc finger.	Zinc finger, AN1-type domain 4.	0.470
G3NN23_GASAC	G3NZ68_GASAC	ENSGACP00000006736	ENSGACP00000010640	Unk zinc finger.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.600
G3NN23_GASAC	G3P2M0_GASAC	ENSGACP00000006736	ENSGACP00000011843	Unk zinc finger.	Uncharacterized protein.	0.466
G3NN23_GASAC	G3P4I1_GASAC	ENSGACP00000006736	ENSGACP00000012504	Unk zinc finger.	Ubiquitin-like modifier activating enzyme 3.	0.544
G3NN23_GASAC	G3PH76_GASAC	ENSGACP00000006736	ENSGACP00000016951	Unk zinc finger.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.466
G3NN23_GASAC	G3QA52_GASAC	ENSGACP00000006736	ENSGACP00000026768	Unk zinc finger.	Ubiquitin B.	0.466
G3NN23_GASAC	MYORG	ENSGACP00000006736	ENSGACP00000007822	Unk zinc finger.	Myogenesis regulating glycosidase (putative); Belongs to the glycosyl hydrolase 31 family.	0.494
G3NN23_GASAC	UBA3	ENSGACP00000006736	ENSGACP00000004543	Unk zinc finger.	Ubiquitin like modifier activating enzyme 3.	0.544
G3NN23_GASAC	UBL4A	ENSGACP00000006736	ENSGACP00000014396	Unk zinc finger.	Ubiquitin like 4A.	0.466
G3NWL2_GASAC	G3NN23_GASAC	ENSGACP00000009731	ENSGACP00000006736	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Unk zinc finger.	0.591
G3NWL2_GASAC	G3NY48_GASAC	ENSGACP00000009731	ENSGACP00000010268	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Zinc finger, AN1-type domain 4.	0.831
G3NWL2_GASAC	G3NZ68_GASAC	ENSGACP00000009731	ENSGACP00000010640	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.913
G3NWL2_GASAC	G3P2M0_GASAC	ENSGACP00000009731	ENSGACP00000011843	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Uncharacterized protein.	0.821
G3NWL2_GASAC	G3P4I1_GASAC	ENSGACP00000009731	ENSGACP00000012504	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Ubiquitin-like modifier activating enzyme 3.	0.805
G3NWL2_GASAC	G3PH76_GASAC	ENSGACP00000009731	ENSGACP00000016951	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.827
G3NWL2_GASAC	G3QA52_GASAC	ENSGACP00000009731	ENSGACP00000026768	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Ubiquitin B.	0.840
G3NWL2_GASAC	UBA3	ENSGACP00000009731	ENSGACP00000004543	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Ubiquitin like modifier activating enzyme 3.	0.805
G3NWL2_GASAC	UBL4A	ENSGACP00000009731	ENSGACP00000014396	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]	Ubiquitin like 4A.	0.821
G3NY48_GASAC	G3NN23_GASAC	ENSGACP00000010268	ENSGACP00000006736	Zinc finger, AN1-type domain 4.	Unk zinc finger.	0.470