Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NN59_GASACSmall RNA binding exonuclease protection factor La. (404 aa)    
Predicted Functional Partners:
G3Q7S8_GASAC
La ribonucleoprotein domain family, member 7.
   
 
 0.953
G3P2N9_GASAC
Nucleolin.
   
 
 0.901
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 
 0.867
G3PCT2_GASAC
Zinc finger CCCH-type containing 15.
   
    0.858
G3N9N6_GASAC
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.840
G3PKR4_GASAC
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.840
G3NU46_GASAC
Small nuclear ribonucleoprotein Sm D2.
   
  
 0.820
G3Q708_GASAC
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
    0.801
G3NDN2_GASAC
BRCA2 and CDKN1A interacting protein.
   
   0.793
G3NXK6_GASAC
Heterogeneous nuclear ribonucleoprotein K.
   
 
 0.792
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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