STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NN59_GASACSmall RNA binding exonuclease protection factor La. (404 aa)    
Predicted Functional Partners:
G3NU46_GASAC
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.827
G3PCT2_GASAC
Zinc finger CCCH-type containing 15.
   
    0.819
G3PZX4_GASAC
Small nuclear ribonucleoprotein Sm D3.
   
   0.813
G3QBK5_GASAC
Chaperonin containing TCP1, subunit 8 (theta).
   
  
 0.794
G3PKR4_GASAC
NOP58 ribonucleoprotein homolog (yeast).
   
   0.792
G3Q9D2_GASAC
Small nuclear ribonucleoprotein polypeptide F.
   
   0.789
G3PA33_GASAC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.780
SRSF3
Serine and arginine rich splicing factor 3b.
   
  
 0.774
G3N5Z6_GASAC
Interleukin enhancer binding factor 2.
   
  
 0.756
G3Q708_GASAC
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
    0.751
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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