Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
G3NNC1_GASACFAST kinase domains 1. (847 aa)    
Predicted Functional Partners:
G3NJV9_GASAC
FAST kinase domains 3.
   
 
 0.905
G3Q4P5_GASAC
Pentatricopeptide repeat domain 3.
  
   
 0.667
G3NXJ6_GASAC
RAP domain-containing protein.
   
 
 0.642
G3PNU9_GASAC
Peptidase D.
   
 
 0.642
G3NVP7_GASAC
Translational activator of mitochondrially encoded cytochrome c oxidase I.
      
 0.641
KDM1B
Lysine demethylase 1B.
      
 0.639
G3N9G2_GASAC
Fas-activated serine/threonine kinase.
      
 0.638
G3NPX0_GASAC
Cysteine/histidine-rich 1.
      
 0.637
G3PRW8_GASAC
Transcription factor A, mitochondrial.
      
 0.637
G3PQU4_GASAC
FAST_1 domain-containing protein.
      
 0.629
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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