STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3NNR4_GASACRetinol dehydrogenase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (320 aa)    
Predicted Functional Partners:
G3PRP1_GASAC
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 0.874
dhrs4
Uncharacterized protein.
  
 
 0.872
G3NE64_GASAC
Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
0.867
G3P2L8_GASAC
O-acyltransferase.
   
 
 0.862
DGAT1
O-acyltransferase.
   
 
 0.858
G3PXC7_GASAC
LRAT domain-containing protein.
     
 0.855
G3NR77_GASAC
Retinoid isomerohydrolase RPE65 b.
     
 0.853
G3PLR3_GASAC
Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family.
   
 
 0.853
G3PTF3_GASAC
Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.
   
 
 0.853
G3Q186_GASAC
Retinoid isomerohydrolase RPE65 a.
     
 0.853
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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