Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
G3NNU6_GASACLYR motif containing 9; Belongs to the complex I LYR family. (76 aa)    
Predicted Functional Partners:
G3P131_GASAC
LYR motif containing 1; Belongs to the complex I LYR family.
      
 0.725
G3P8Y9_GASAC
LYR motif containing 7; Belongs to the complex I LYR family.
      
 0.672
G3PF66_GASAC
Galectin.
      
 0.641
G3PTP8_GASAC
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
      
 0.639
G3Q3P8_GASAC
Helicase with zinc finger.
      
 0.636
G3PKC0_GASAC
WD repeat and SOCS box containing 1.
      
 0.630
G3PMC6_GASAC
WD repeat and SOCS box containing 2.
      
 0.630
METTL1
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
  
 0.620
G3Q032_GASAC
Pseudouridine synthase 1.
   
  
 0.580
G3PFW2_GASAC
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.567
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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