G3NWL8_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3NWL8_GASAC

Uncharacterized protein. (117 aa)

Predicted Functional Partners:

PES1

0.903

G3NUK0_GASAC

0.859

WDR12

0.839

G3P253_GASAC

0.838

G3N523_GASAC

0.831

G3P7T0_GASAC

0.831

G3PV23_GASAC

0.808

G3PKR4_GASAC

0.806

G3PII4_GASAC

0.804

UTP14C

0.801

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N523_GASAC	G3NUK0_GASAC	ENSGACP00000000393	ENSGACP00000009018	Guanine nucleotide binding protein-like 3 (nucleolar).	EBNA1 binding protein 2.	0.996
G3N523_GASAC	G3NWL8_GASAC	ENSGACP00000000393	ENSGACP00000009737	Guanine nucleotide binding protein-like 3 (nucleolar).	Uncharacterized protein.	0.831
G3N523_GASAC	G3P7T0_GASAC	ENSGACP00000000393	ENSGACP00000013654	Guanine nucleotide binding protein-like 3 (nucleolar).	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.854
G3N523_GASAC	G3PKR4_GASAC	ENSGACP00000000393	ENSGACP00000018194	Guanine nucleotide binding protein-like 3 (nucleolar).	NOP58 ribonucleoprotein homolog (yeast).	0.942
G3N523_GASAC	G3PV23_GASAC	ENSGACP00000000393	ENSGACP00000021460	Guanine nucleotide binding protein-like 3 (nucleolar).	Mtr4 exosome RNA helicase.	0.914
G3N523_GASAC	PES1	ENSGACP00000000393	ENSGACP00000012290	Guanine nucleotide binding protein-like 3 (nucleolar).	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.997
G3N523_GASAC	UTP14C	ENSGACP00000000393	ENSGACP00000001930	Guanine nucleotide binding protein-like 3 (nucleolar).	UTP14C small subunit processome component.	0.864
G3N523_GASAC	WDR12	ENSGACP00000000393	ENSGACP00000018233	Guanine nucleotide binding protein-like 3 (nucleolar).	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
G3NUK0_GASAC	G3N523_GASAC	ENSGACP00000009018	ENSGACP00000000393	EBNA1 binding protein 2.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.996
G3NUK0_GASAC	G3NWL8_GASAC	ENSGACP00000009018	ENSGACP00000009737	EBNA1 binding protein 2.	Uncharacterized protein.	0.859
G3NUK0_GASAC	G3P7T0_GASAC	ENSGACP00000009018	ENSGACP00000013654	EBNA1 binding protein 2.	Guanine nucleotide binding protein-like 3 (nucleolar)-like.	0.995
G3NUK0_GASAC	G3PII4_GASAC	ENSGACP00000009018	ENSGACP00000017412	EBNA1 binding protein 2.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.823
G3NUK0_GASAC	G3PKR4_GASAC	ENSGACP00000009018	ENSGACP00000018194	EBNA1 binding protein 2.	NOP58 ribonucleoprotein homolog (yeast).	0.983
G3NUK0_GASAC	G3PV23_GASAC	ENSGACP00000009018	ENSGACP00000021460	EBNA1 binding protein 2.	Mtr4 exosome RNA helicase.	0.843
G3NUK0_GASAC	PES1	ENSGACP00000009018	ENSGACP00000012290	EBNA1 binding protein 2.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
G3NUK0_GASAC	UTP14C	ENSGACP00000009018	ENSGACP00000001930	EBNA1 binding protein 2.	UTP14C small subunit processome component.	0.953
G3NUK0_GASAC	WDR12	ENSGACP00000009018	ENSGACP00000018233	EBNA1 binding protein 2.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
G3NWL8_GASAC	G3N523_GASAC	ENSGACP00000009737	ENSGACP00000000393	Uncharacterized protein.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.831
G3NWL8_GASAC	G3NUK0_GASAC	ENSGACP00000009737	ENSGACP00000009018	Uncharacterized protein.	EBNA1 binding protein 2.	0.859
G3NWL8_GASAC	G3P253_GASAC	ENSGACP00000009737	ENSGACP00000011676	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.838