G3PA30_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3PA30_GASAC

POU domain protein. (572 aa)

Predicted Functional Partners:

G3Q9L7_GASAC

0.623

G3PSY4_GASAC

0.604

G3NWJ8_GASAC

0.591

G3NWX0_GASAC

0.589

G3QCM0_GASAC

0.560

G3NIQ2_GASAC

0.559

G3P6X8_GASAC

0.559

G3PA81_GASAC

0.559

G3PUL7_GASAC

0.559

G3NAI4_GASAC

0.550

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3NAI4_GASAC	G3NIQ2_GASAC	ENSGACP00000002329	ENSGACP00000005212	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA box binding protein like 2.	0.970
G3NAI4_GASAC	G3NWJ8_GASAC	ENSGACP00000002329	ENSGACP00000009717	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.900
G3NAI4_GASAC	G3NWX0_GASAC	ENSGACP00000002329	ENSGACP00000009839	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIE, polypeptide 1, alpha.	0.917
G3NAI4_GASAC	G3P6X8_GASAC	ENSGACP00000002329	ENSGACP00000013352	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.970
G3NAI4_GASAC	G3PA30_GASAC	ENSGACP00000002329	ENSGACP00000014454	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	POU domain protein.	0.550
G3NAI4_GASAC	G3PA81_GASAC	ENSGACP00000002329	ENSGACP00000014505	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TBP-like 1.	0.958
G3NAI4_GASAC	G3PSY4_GASAC	ENSGACP00000002329	ENSGACP00000020720	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.987
G3NAI4_GASAC	G3PUL7_GASAC	ENSGACP00000002329	ENSGACP00000021304	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA box binding protein.	0.970
G3NIQ2_GASAC	G3NAI4_GASAC	ENSGACP00000005212	ENSGACP00000002329	TATA box binding protein like 2.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.970
G3NIQ2_GASAC	G3NWJ8_GASAC	ENSGACP00000005212	ENSGACP00000009717	TATA box binding protein like 2.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.957
G3NIQ2_GASAC	G3NWX0_GASAC	ENSGACP00000005212	ENSGACP00000009839	TATA box binding protein like 2.	General transcription factor IIE, polypeptide 1, alpha.	0.970
G3NIQ2_GASAC	G3P6X8_GASAC	ENSGACP00000005212	ENSGACP00000013352	TATA box binding protein like 2.	Uncharacterized protein.	0.846
G3NIQ2_GASAC	G3PA30_GASAC	ENSGACP00000005212	ENSGACP00000014454	TATA box binding protein like 2.	POU domain protein.	0.559
G3NIQ2_GASAC	G3PA81_GASAC	ENSGACP00000005212	ENSGACP00000014505	TATA box binding protein like 2.	TBP-like 1.	0.883
G3NIQ2_GASAC	G3PSY4_GASAC	ENSGACP00000005212	ENSGACP00000020720	TATA box binding protein like 2.	General transcription factor IIB.	0.983
G3NIQ2_GASAC	G3PUL7_GASAC	ENSGACP00000005212	ENSGACP00000021304	TATA box binding protein like 2.	TATA box binding protein.	0.842
G3NIQ2_GASAC	G3Q9L7_GASAC	ENSGACP00000005212	ENSGACP00000026582	TATA box binding protein like 2.	Brain-specific homeobox.	0.490
G3NIQ2_GASAC	G3QCM0_GASAC	ENSGACP00000005212	ENSGACP00000027636	TATA box binding protein like 2.	PCF11 cleavage and polyadenylation factor subunit.	0.676
G3NWJ8_GASAC	G3NAI4_GASAC	ENSGACP00000009717	ENSGACP00000002329	Polymerase (RNA) II (DNA directed) polypeptide F.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.900
G3NWJ8_GASAC	G3NIQ2_GASAC	ENSGACP00000009717	ENSGACP00000005212	Polymerase (RNA) II (DNA directed) polypeptide F.	TATA box binding protein like 2.	0.957