STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3PE39_GASACTransducin (beta)-like 3. (907 aa)    
Predicted Functional Partners:
G3NET5_GASAC
WD repeat domain 46.
   
 
 0.999
G3NKA3_GASAC
UTP15 small subunit processome component.
  
0.999
G3NW42_GASAC
Ribosomal RNA processing 7 homolog A.
   
 0.999
G3NZZ3_GASAC
WD repeat domain 3.
  
0.999
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.999
G3P7C6_GASAC
HEAT repeat containing 1.
   
 0.999
G3P7P0_GASAC
Nucleolar protein 6.
   
 0.999
G3P848_GASAC
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 
0.999
G3PHC0_GASAC
WD repeat domain 43.
   
0.999
G3PKR4_GASAC
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.