STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3PM48_GASACNipsnap homolog 1 (C. elegans). (279 aa)    
Predicted Functional Partners:
RAB40C
RAB40C, member RAS oncogene family.
   
 
  0.776
G3NKA3_GASAC
UTP15 small subunit processome component.
   
    0.756
G3P4V7_GASAC
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.751
G3PTW8_GASAC
Methenyltetrahydrofolate synthetase domain containing.
   
    0.748
G3NWY3_GASAC
Small integral membrane protein 12.
   
  
 0.747
G3NQJ9_GASAC
WD repeat domain 6.
   
    0.725
G3P227_GASAC
NOP56 ribonucleoprotein homolog.
   
    0.711
G3P3F3_GASAC
Phosphoglycolate phosphatase; Belongs to the HAD-like hydrolase superfamily.
 
   
  0.651
G3PJP7_GASAC
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 
  0.649
G3NMJ1_GASAC
Hydroxyacid oxidase (glycolate oxidase) 1.
   
 
  0.648
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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