STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3PTD4_GASACMINDY lysine 48 deubiquitinase 2. (455 aa)    
Predicted Functional Partners:
G3NZ68_GASAC
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.826
G3QA52_GASAC
Ubiquitin B.
    
   0.825
G3PCG6_GASAC
Ribosomal protein S27a.
    
   0.797
G3PBJ9_GASAC
SET domain containing 4.
    
 0.751
G3PFG5_GASAC
Methylmalonyl CoA mutase.
    
 0.751
G3PID3_GASAC
Protein-histidine N-methyltransferase.
    
 0.751
RNF126
Ring finger protein 126.
    
  0.687
G3PDI9_GASAC
Ring finger protein 115.
    
  0.677
G3PR47_GASAC
Ring finger protein 126.
    
  0.675
G3PMV9_GASAC
Ring finger protein 215.
    
  0.667
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.