G3PUL4_GASAC protein (Gasterosteus aculeatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G3PUL4_GASAC

Programmed cell death 2. (368 aa)

Predicted Functional Partners:

G3PDV0_GASAC

0.887

G3NDN2_GASAC

0.766

G3N4R0_GASAC

0.676

G3Q8A0_GASAC

0.655

G3NZH8_GASAC

0.567

G3Q005_GASAC

0.565

G3PEB8_GASAC

0.563

G3P9E6_GASAC

0.548

G3N644_GASAC

0.546

G3PY89_GASAC

0.534

Your Current Organism:

Gasterosteus aculeatus

NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3N4R0_GASAC	G3PDV0_GASAC	ENSGACP00000000280	ENSGACP00000015774	Mitochondrial ribosomal protein S5.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.901
G3N4R0_GASAC	G3PEB8_GASAC	ENSGACP00000000280	ENSGACP00000015942	Mitochondrial ribosomal protein S5.	Partner of NOB1 homolog.	0.874
G3N4R0_GASAC	G3PUL4_GASAC	ENSGACP00000000280	ENSGACP00000021301	Mitochondrial ribosomal protein S5.	Programmed cell death 2.	0.676
G3N4R0_GASAC	G3PY89_GASAC	ENSGACP00000000280	ENSGACP00000022578	Mitochondrial ribosomal protein S5.	Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.779
G3N4R0_GASAC	G3Q005_GASAC	ENSGACP00000000280	ENSGACP00000023195	Mitochondrial ribosomal protein S5.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.952
G3N4R0_GASAC	G3Q8A0_GASAC	ENSGACP00000000280	ENSGACP00000026114	Mitochondrial ribosomal protein S5.	LTV1 ribosome biogenesis factor.	0.969
G3N644_GASAC	G3NDN2_GASAC	ENSGACP00000000768	ENSGACP00000003432	Uncharacterized protein.	BRCA2 and CDKN1A interacting protein.	0.731
G3N644_GASAC	G3P9E6_GASAC	ENSGACP00000000768	ENSGACP00000014220	Uncharacterized protein.	Glutamate-rich WD repeat containing 1.	0.841
G3N644_GASAC	G3PEB8_GASAC	ENSGACP00000000768	ENSGACP00000015942	Uncharacterized protein.	Partner of NOB1 homolog.	0.442
G3N644_GASAC	G3PUL4_GASAC	ENSGACP00000000768	ENSGACP00000021301	Uncharacterized protein.	Programmed cell death 2.	0.546
G3N644_GASAC	G3PY89_GASAC	ENSGACP00000000768	ENSGACP00000022578	Uncharacterized protein.	Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.523
G3N644_GASAC	G3Q005_GASAC	ENSGACP00000000768	ENSGACP00000023195	Uncharacterized protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.879
G3N644_GASAC	G3Q8A0_GASAC	ENSGACP00000000768	ENSGACP00000026114	Uncharacterized protein.	LTV1 ribosome biogenesis factor.	0.877
G3NDN2_GASAC	G3N644_GASAC	ENSGACP00000003432	ENSGACP00000000768	BRCA2 and CDKN1A interacting protein.	Uncharacterized protein.	0.731
G3NDN2_GASAC	G3P9E6_GASAC	ENSGACP00000003432	ENSGACP00000014220	BRCA2 and CDKN1A interacting protein.	Glutamate-rich WD repeat containing 1.	0.736
G3NDN2_GASAC	G3PEB8_GASAC	ENSGACP00000003432	ENSGACP00000015942	BRCA2 and CDKN1A interacting protein.	Partner of NOB1 homolog.	0.477
G3NDN2_GASAC	G3PUL4_GASAC	ENSGACP00000003432	ENSGACP00000021301	BRCA2 and CDKN1A interacting protein.	Programmed cell death 2.	0.766
G3NDN2_GASAC	G3Q8A0_GASAC	ENSGACP00000003432	ENSGACP00000026114	BRCA2 and CDKN1A interacting protein.	LTV1 ribosome biogenesis factor.	0.507
G3NZH8_GASAC	G3PDV0_GASAC	ENSGACP00000010751	ENSGACP00000015774	Zinc finger protein 277.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.400
G3NZH8_GASAC	G3PUL4_GASAC	ENSGACP00000010751	ENSGACP00000021301	Zinc finger protein 277.	Programmed cell death 2.	0.567