STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3PVJ3_GASACH/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (213 aa)    
Predicted Functional Partners:
G3NKC3_GASAC
Dyskeratosis congenita 1, dyskerin.
   
 
 0.995
G3QCK6_GASAC
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.970
G3Q520_GASAC
NOP10 ribonucleoprotein homolog (yeast).
   
 
 0.968
G3PRQ2_GASAC
TruB pseudouridine (psi) synthase family member 1.
   
 
 0.946
G3N9C1_GASAC
TruB pseudouridine (psi) synthase family member 2.
   
 
 0.904
G3PDD7_GASAC
SHQ1, H/ACA ribonucleoprotein assembly factor.
   
 
 0.840
G3P3N4_GASAC
Ribonuclease P/MRP 38 subunit.
   
 0.832
G3N981_GASAC
tRNA selenocysteine 1 associated protein 1a.
   
   0.828
G3PQ32_GASAC
tRNA selenocysteine 1 associated protein 1b.
   
   0.828
G3NKP9_GASAC
Ribosomal L1 domain containing 1.
   
  
 0.796
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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