STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G3PXH8_GASACFSHD region gene 1. (256 aa)    
Predicted Functional Partners:
G3NBJ7_GASAC
CWC22 spliceosome associated protein homolog.
   
   0.978
G3P105_GASAC
Pre-mRNA processing factor 8.
    
 
 0.887
G3Q1K0_GASAC
Pre-mRNA processing factor 19.
    
   0.843
G3PCH6_GASAC
Cell division cycle 40 homolog (S. cerevisiae).
    
   0.834
G3P3L5_GASAC
Elongation factor Tu GTP binding domain containing 2.
    
   0.816
G3NVX4_GASAC
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
   
   0.801
G3PA33_GASAC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.800
G3PZX4_GASAC
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.800
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 
 0.799
G3Q9D2_GASAC
Small nuclear ribonucleoprotein polypeptide F.
    
 
 0.799
Your Current Organism:
Gasterosteus aculeatus
NCBI taxonomy Id: 69293
Other names: G. aculeatus, three spined stickleback, three-spined stickleback
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