STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO05556.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
KOO03457.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.681
KOO02832.1
Nitrogen regulation protein NR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
KOO05557.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
KOO05558.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
KOO05490.1
Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
KOO03309.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
KOO05555.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
KOO03464.1
Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
KOO02852.1
General secretion pathway protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.472
Your Current Organism:
Vibrio nereis
NCBI taxonomy Id: 693
Other names: ATCC 25917, Beneckea nereida, Beneckea nereis, CAIM 322, CCUG 28585, CIP 103194, DSM 19584, IFO 15637, JCM 21190, LMG 3895, LMG:3895, NBRC 15637, NCCB 73020, V. nereis, strain 80
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.