STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO04509.1Nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (536 aa)    
Predicted Functional Partners:
KOO04804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.725
KOO02968.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.725
KOO04508.1
Oxalate:formate antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.696
KOO02972.1
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.693
KOO03520.1
Ubiquitin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.665
KOO05550.1
Trypsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.660
KOO04743.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.638
KOO04744.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.638
KOO04816.1
Peptidase M9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.638
KOO04227.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.597
Your Current Organism:
Vibrio nereis
NCBI taxonomy Id: 693
Other names: ATCC 25917, Beneckea nereida, Beneckea nereis, CAIM 322, CCUG 28585, CIP 103194, DSM 19584, IFO 15637, JCM 21190, LMG 3895, LMG:3895, NBRC 15637, NCCB 73020, V. nereis, strain 80
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