STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO04602.1Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1059 aa)    
Predicted Functional Partners:
KOO04434.1
Spindolin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
KOO03264.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.987
KOO05027.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
KOO04816.1
Peptidase M9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.914
KOO04736.1
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.912
KOO05571.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.906
KOO03505.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.906
KOO05025.1
Chitobiase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.899
KOO04672.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.886
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
   
 
 0.850
Your Current Organism:
Vibrio nereis
NCBI taxonomy Id: 693
Other names: ATCC 25917, Beneckea nereida, Beneckea nereis, CAIM 322, CCUG 28585, CIP 103194, DSM 19584, IFO 15637, JCM 21190, LMG 3895, LMG:3895, NBRC 15637, NCCB 73020, V. nereis, strain 80
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